Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq862 233 2e-56 seq34 104 3e-17 >seq862 Length=148971 Score = 233 bits (258), Expect = 2e-56 Identities = 623/952 (65%), Gaps = 49/952 (5%) Strand=Plus/Minus Query 33271 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 33330 || |||||||||| || ||| |||||||| || || || || || || ||||| | Sbjct 30608 CTCGAGACATAACACCAGCCCGTTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCT 30549 Query 33331 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTA---------------- 33374 ||||||| | |||||| ||||||||||| ||||| |||||| | Sbjct 30548 TTCCTTCGATTGATATGTTTTCCATGAAGTCAAAAGGATTGTCAGAATGATACATCTAAA 30489 Query 33375 ------ACA--------------TTGTAAAtttttttAAATCCCAATTCAGAAATCAATC 33414 ||| ||| ||| |||| | | || | |||| | | | Sbjct 30488 AGGAAAACAATTAAATAGAAGATTTGCAAACCTTTTCATAACCAAGTTCAACCAGTAGCC 30429 Query 33415 TATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAA 33474 | || |||| ||||| || || ||||| || |||||||| || || | | | Sbjct 30428 TGTCAGCGATAAATTCAATGTACTGACACATCAATTTGCAATTCATCCCAATTAAGCTGA 30369 Query 33475 CTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATC 33534 |||| || || | | | ||| || ||||| || ||||| | | |||| || | Sbjct 30368 CTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGAACCGCCTCTCTTATTATTGACT 30309 Query 33535 TAACGGTTTCTTCACTCGGTGGATGTA--ATAA-ATGTTTAAACATCAAACATGCGAAAT 33591 ||| ||||| | || || | | |||| ||||||||||| | ||| ||||||| Sbjct 30308 CAACACGTTCTT---TGGGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAAT 30252 Query 33592 CGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTA 33651 | || || || || ||||||||||| |||||||| || ||| | ||||| ||||| | Sbjct 30251 CACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAA 30192 Query 33652 GGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTA 33711 | || || || |||||||| ||||| | || || || ||||| |||| ||||| | Sbjct 30191 GACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCCA 30132 Query 33712 CTGCAGCAAAGGCAA-TAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCCACTTT 33767 |||| ||||| |||| |||| | ||| || || | | ||| ||||| | | Sbjct 30131 CTGCTGCAAAAGCAACTAAG-CGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATCT 30073 Query 33768 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC-TATGGCATTAAAGAGATA 33826 ||||| | ||||| || ||||||| | ||| | |||||| || |||||| | Sbjct 30072 AATGCCCACTGAGCCTTTTTAGCAACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAA 30014 Query 33827 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33886 || |||| ||| ||||| | || ||||| ||||| | | |||||||| || || Sbjct 30013 GTCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATCAATAAAGAGTACATTTCAGAGTG 29954 Query 33887 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 ||| || || || || ||||| | || |||||||| | | |||| | |||||| ||||| Sbjct 29953 AATATTCTCGATAGCTATCTGCATCCCATAGAAACAACGAACCTCTGGAATCTGGACTTC 29894 Query 33947 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGC 34006 | | || ||||| | || || || ||||| ||||| || ||||| || || Sbjct 29893 TTGGCTGAAGCGTTCCAGGAGGTTCTCGAGGACAATTCCGTCACTCGCCGCAAAGAAGGC 29834 Query 34007 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 34066 || || | ||| |||| ||| | | ||| | ||||| ||| ||| Sbjct 29833 TAACACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAAATC 29774 Query 34067 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 34126 ||| |||| ||| || |||||||| |||||||| || || | ||||| ||||| | || Sbjct 29773 TTTGGATAAATCGACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATAAAAATG 29714 Query 34127 CCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGT 34178 ||||| || || |||| || ||||||| || || | | ||| |||||| Sbjct 29713 CCAGACATCGTGGTATTCTATGGGGAAAAGGACGAAACGGTGTGGGTTTGGT 29662 >seq34 Length=32115376 Score = 104 bits (114), Expect = 3e-17 Identities = 178/257 (69%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 63476 AATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCA---CTGGCACGAATATT 63532 |||||| |||||| ||||| || || | || ||| ||| ||| ||||| || Sbjct 8065758 AATACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTG---CGAATGTT 8065814 Query 63533 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63592 | || ||| || || ||||| || | ||||| || | ||| ||| ||||| ||| Sbjct 8065815 ATGAACATTTAGTCCAATACCCCCGGCATTCTTAGATATAACTGCACATTCTTTTAGCGT 8065874 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63652 || || ||||||||||| ||||| || |||| | | |||||||| || || | || Sbjct 8065875 ATCGTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTCGAAAGCTG 8065934 Query 63653 GTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63712 | || ||| || || ||||| | || || ||||| || |||||||| |||||||| Sbjct 8065935 TGGTTTAGGAGTCCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCACTTTTCAGA 8065994 Query 63713 AAGTAGATTGTACGTCT 63729 | || || ||||||| Sbjct 8065995 CATTAAGTTATACGTCT 8066011 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 63951 GGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA 64010 |||||||||||| || |||||||| ||| ||||||| || | || || | Sbjct 8067210 GGAGAATGTTTCTTGGTTCGAGGATTAATGTAGCAATATAAATCTTCAACAACATCTGAA 8067269 Query 64011 AA--TAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGG 64068 || ||| ||| |||||||||||||||||||| | ||| | | || || | ||||| Sbjct 8067270 AACCTAGATTTC--GTTTCCTTGTGTAGATTTGAAACGGCAAGACGAGCAGCCAAAATGG 8067327 Query 64069 CATAATCCGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 64127 |||| || |||||| |||| | || | | || | | |||||||||||| | |||||| Sbjct 8067328 CATATTCATGATGTTTTGTAAT-CATGCTTGCACATGTCTCGGCTGCCAGATTATCCAAT 8067386 Query 64128 TCTACCGTTGTTACTCCA 64145 ||||| || || |||||| Sbjct 8067387 TCTACAGTAGTCACTCCA 8067404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629810632642800