Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq862 215 5e-51 seq34 96.9 3e-15 >seq862 Length=148971 Score = 215 bits (238), Expect = 5e-51 Identities = 531/794 (67%), Gaps = 15/794 (2%) Strand=Plus/Minus Query 11426 TTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATAC 11485 ||| | || |||||| |||| | || | || || || |||| ||||| || ||| Sbjct 30465 TTGCAAACCTTTTCATAACCAAGTTCAACCAGTAGCCTGTCAGCGATAAATTCAATGTAC 30406 Query 11486 TGAGACATTAAACAACAATTCATACCTAT-AAGATCCACCGGAATAGCAACTGTCAAAAA 11544 ||| |||| || |||||||| || || ||| | || || | || | | ||||| Sbjct 30405 TGACACATCAATTTGCAATTCATCCCAATTAAGCTG-ACTGGTAGGGCTTCGGATAAAAA 30347 Query 11545 CTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGG 11604 ||||| |||||| |||||| || | ||||| ||| | | || | ||| | || || Sbjct 30346 CTCCTGTTCTATCAGAACCGCCTCTCTTATTATTGAC-TCAACACGTTCTTTG--GGAGG 30290 Query 11605 ATGTA--ATAA-ATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCT 11661 | | |||| ||||||||||| || ||| || ||||||||||||| ||||||||||| Sbjct 30289 CTTTTTGATAATATGTTTAAACAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCT 30230 Query 11662 ACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAA 11721 ||| |||| |||||| ||| | | ||| ||||| | |||||||| || | ||| || Sbjct 30229 ACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAA 30170 Query 11722 TATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCT 11781 |||||| ||||| ||||||||| || | || ||||| |||||||| || |||| | Sbjct 30169 TATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAACTAAGCG 30110 Query 11782 TTCTCCATA--TACCTTGTTGCT-AGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTT 11838 |||| || | || || | | ||||| | | ||||| | ||| || || Sbjct 30109 TTCTGCAAAAGTAGATTTAGAATCACCAATCCAATCTAATGCCCACTGAGCCTTTTTAGC 30050 Query 11839 TACGCA--TTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTT 11896 || || || ||| | ||| ||||| || | | ||||| || ||| | Sbjct 30049 AACACAAGTTAAGTTGCT--TATGGCGTTGAAGAGAAAGTCCCTTTCTTTAGAGTCTTTG 29992 Query 11897 ACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGA 11956 | |||||||| || |||||| |||||||| || |||||||| || |||||||| || Sbjct 29991 ATGTATGTATCAATCAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGC 29932 Query 11957 AATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAA 12016 | ||||||||||| || |||||| | ||| || || || | |||| | Sbjct 29931 ATCCCATAGAAACAACGAACCTCTGGAATCTGGACTTCTTGGCTGAAGCGTTCCAGGAGG 29872 Query 12017 TTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTAT 12076 ||||| ||||| || ||||| | ||||| || |||| | | ||| || | Sbjct 29871 TTCTCGAGGACAATTCCGTCACTCGCCGCAAAGAAGGCTAACACGTAGGATATGAAATGA 29812 Query 12077 TTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCA 12136 ||| | |||| ||||||| |||||||| |||||||| || ||||| Sbjct 29811 CGTTCCCCAACTTTTAAAGACTCCCAATGTATGAAATCTTTGGATAAATCGACCTCTTCC 29752 Query 12137 ACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATA 12196 || ||||||||| || || | | ||||| | | ||||| ||| || || | || Sbjct 29751 ACAGTCCAAAAAGAGGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATG 29692 Query 12197 GGGAAAATAACGAA 12210 ||||||| ||||| Sbjct 29691 GGGAAAAGGACGAA 29678 >seq34 Length=32115376 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 38295 TCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACC 38354 ||| || || || |||| || ||||| | || |||| ||||| |||||| | || || Sbjct 8065827 TCCAATACCCCCGGCATTCTTAGATATAACTGCACATTCTTTTAGCGTATCGTAAATGCC 8065886 Query 38355 TTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGT 38414 ||||||||| || || || || | | | ||||||||| || | || || ||||| Sbjct 8065887 TTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTCGAAAGCTGTGGTTTAGGAGT 8065946 Query 38415 TCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATA 38474 || |||||||| | ||| || || |||||| | ||||| ||||| |||| | ||||| Sbjct 8065947 CCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCACTTTTCAGACATTAAGTTATA 8066006 Query 38475 TGT 38477 || Sbjct 8066007 CGT 8066009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468519616944400