Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq862 235 7e-57 seq34 107 3e-18 >seq862 Length=148971 Score = 235 bits (260), Expect = 7e-57 Identities = 511/752 (68%), Gaps = 17/752 (2%) Strand=Plus/Minus Query 35990 CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 36049 || || |||| |||||| || || ||||| || |||||||| || || | | Sbjct 30429 CTGTCAGCGATAAATTCAATGTACTGACACATCAATTTGCAATTCATCCCAATTAAGCTG 30370 Query 36050 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAAT-AGAGACCGCGTCTGTTATAATAGA 36108 ||||| || || | | | ||| || ||||| || ||| ||||| ||| |||| || || Sbjct 30369 ACTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGA-ACCGCCTCTCTTATTATTGA 30311 Query 36109 TATTACTGTTTCTTCACTCGGTGGATACA--ATAA-ATGTTTAAACATCAAACATGCGAA 36165 || ||||| | || || | |||| ||||||||||| | ||| ||||| Sbjct 30310 CTCAACACGTTCTT---TGGGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAA 30254 Query 36166 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 36225 ||| || ||||| || ||||||||||| |||||||| ||| ||| | ||||| ||||| Sbjct 30253 ATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCAT 30194 Query 36226 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 36285 || || || || |||||||| ||||| | ||||| |||||||| || | ||||| Sbjct 30193 AAGACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTC 30134 Query 36286 TACTGCCGCAAAGGCAA-TAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCACT 36341 ||||| ||||| |||| |||| | ||| || || | | ||| ||||| | Sbjct 30133 CACTGCTGCAAAAGCAACTAAG-CGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAAT 30075 Query 36342 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA--TTGTCTCTATAGCATTAAAGAG 36399 | ||||| | ||||| || ||||||| | ||| || ||| || || ||||| Sbjct 30074 CTAATGCCCACTGAGCCTTTTTAGCAACACAAGTTAAGTTG-CT-TATGGCGTTGAAGAG 30017 Query 36400 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 36459 | ||| |||| ||| ||||| | |||||||||||||| | | |||||||| || Sbjct 30016 AAAGTCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATCAATAAAGAGTACATTTCAGA 29957 Query 36460 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 36519 ||||| || || || || || || | || |||||||| | | |||| | |||||| || Sbjct 29956 GTGAATATTCTCGATAGCTATCTGCATCCCATAGAAACAACGAACCTCTGGAATCTGGAC 29897 Query 36520 TTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 36579 |||| | || ||||| | || || || ||||||||||| || ||||| || Sbjct 29896 TTCTTGGCTGAAGCGTTCCAGGAGGTTCTCGAGGACAATTCCGTCACTCGCCGCAAAGAA 29837 Query 36580 CGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGAT 36639 || || || | ||| |||| ||| | ||| | ||||| ||| Sbjct 29836 GGCTAACACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAA 29777 Query 36640 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 36699 |||||| |||| ||| || |||||||| |||||||| || || | ||||| ||||| | Sbjct 29776 ATCTTTGGATAAATCGACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATAAAA 29717 Query 36700 ATTCCAGATGTCATGATATTGAATTGGAAAAA 36731 || ||||| || || |||| || || |||| Sbjct 29716 ATGCCAGACATCGTGGTATTCTATGGGGAAAA 29685 >seq34 Length=32115376 Score = 107 bits (118), Expect = 3e-18 Identities = 176/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 66269 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACT 66328 ||||||||| ||| ||||| || || | || ||| | ||| ||||| ||| Sbjct 8065758 AATACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTGCGAATGTTATG 8065817 Query 66329 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 66388 || ||| || || ||||| || | ||||| || | ||| ||| ||||| |||||| Sbjct 8065818 AACATTTAGTCCAATACCCCCGGCATTCTTAGATATAACTGCACATTCTTTTAGCGTATC 8065877 Query 66389 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 66448 || ||||| ||||||||||| || |||| | | |||||||| || || | || | Sbjct 8065878 GTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTCGAAAGCTGTGG 8065937 Query 66449 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 66508 | ||| || || ||||| | || || ||||| || |||||||| |||||||| | Sbjct 8065938 TTTAGGAGTCCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCACTTTTCAGACAT 8065997 Query 66509 TAGATTGTACGTCT 66522 || || ||||||| Sbjct 8065998 TAAGTTATACGTCT 8066011 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 66744 GGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTA 66803 |||||||||||| || |||||| | ||| ||||||| || | || || | Sbjct 8067210 GGAGAATGTTTCTTGGTTCGAGGATTAATGTAGCAATATAAATCTTCAACAACATCTGAA 8067269 Query 66804 AA--TAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGG 66861 || ||| ||| ||||| |||||||||||||| ||||| | | ||| || | ||||| Sbjct 8067270 AACCTAGATTTC--GTTTCCTTGTGTAGATTTGAAACGGCAAGACGAGCAGCCAAAATGG 8067327 Query 66862 CATAATCCGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 66920 |||| || |||||| |||| | || | | || | | |||||||||||| | |||||| Sbjct 8067328 CATATTCATGATGTTTTGTAAT-CATGCTTGCACATGTCTCGGCTGCCAGATTATCCAAT 8067386 Query 66921 TCTACCGTTGTTACTCCA 66938 ||||| || || |||||| Sbjct 8067387 TCTACAGTAGTCACTCCA 8067404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658165518963400