Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 125 7e-24 seq14 107 2e-18 seq862 86.0 6e-12 >seq1 Length=65476681 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || ||||||| || |||||||| || || || ||||| | Sbjct 54270784 CCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGAC 54270725 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||| ||||| ||||||||| ||||||||||||| ||||| || || Sbjct 54270724 AATGTGCGACCATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGGA 54270665 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || |||||||| || ||| || || | | || | ||||| | ||||| || Sbjct 54270664 ATCCCTTCTTTATCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTCGGCTCAACT 54270605 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||| || || || || ||||| |||||||||||||| Sbjct 54270604 TCCAAAGTGATCGTTTTACCAGTTAATGTTTTCACGAATATTTGCAT 54270558 Score = 104 bits (114), Expect = 2e-17 Identities = 161/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTT-TTGAATGTTATAATCGCT 139596 || || || | |||||| || ||||||| || |||||||| ||| || | |||| Sbjct 54271013 CCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTTGGATATGTAAATCAGA 54270954 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||||| ||||| ||||| ||||||||| ||||||||||||| ||||| || || Sbjct 54270953 CAATGTGCGACCATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGG 54270894 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| || || | | || | ||||| | ||||| || Sbjct 54270893 AATCCCTTCTTTATCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTCGGCTCAAC 54270834 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||| || || ||||| || || || || || |||||| Sbjct 54270833 TTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCATA 54270785 >seq14 Length=34464480 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || |||||||| || ||||| || || || || | || | ||||| | ||| ||||| Sbjct 20621658 GTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACC 20621716 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||||| |||||| || || ||||| || ||||||||||| ||| || ||| Sbjct 20621717 AGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTT 20621776 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || || | ||||||||||| | || | |||||| || |||||||| Sbjct 20621777 CACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGT 20621836 Query 139747 TTTTACGAATATTTGCAT 139764 || || ||||||||||| Sbjct 20621837 CTTCACAAATATTTGCAT 20621854 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || |||||||| || ||||| || || || || | || | ||||| | ||| ||||| Sbjct 20637666 GTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACC 20637724 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||||| |||||| || || ||||| || ||||||||||| ||| || ||| Sbjct 20637725 AGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTT 20637784 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || || | ||||||||||| | || | |||||| || |||||||| Sbjct 20637785 CACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGT 20637844 Query 139747 TTTTACGAATATTTGCAT 139764 || || ||||||||||| Sbjct 20637845 CTTCACAAATATTTGCAT 20637862 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || |||||||| || ||||| || || || || | || | ||||| | ||| ||||| Sbjct 20637894 GTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACC 20637952 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||||| |||||| || || ||||| || ||||||||||| ||| || ||| Sbjct 20637953 AGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTT 20638012 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || || | ||||||||||| | || | |||||| || |||||||| Sbjct 20638013 CACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGT 20638072 Query 139747 TTTTACGAATATTTGCAT 139764 || || ||||||||||| Sbjct 20638073 CTTCACAAATATTTGCAT 20638090 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | || ||||| | || | || ||||| || || ||||| || || Sbjct 20621399 GCCTCCACGCAGGCGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGA 20621458 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || || | || | ||||| | ||| |||||||| |||||| |||||| || || |||| Sbjct 20621459 CAGAGTACGTCCA-TCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAG 20621517 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || ||||||||||| ||| || ||| | | || | || || | ||||||| Sbjct 20621518 GAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCA 20621577 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | |||||| || |||||||| || || ||||||||||| Sbjct 20621578 CCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20621626 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | || ||||| | || | || ||||| || || ||||| || || Sbjct 20637407 GCCTCCACGCAGGCGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGA 20637466 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || || | || | ||||| | ||| |||||||| |||||| |||||| || || |||| Sbjct 20637467 CAGAGTACGTCCA-TCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAG 20637525 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || ||||||||||| ||| || ||| | | || | || || | ||||||| Sbjct 20637526 GAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCA 20637585 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | |||||| || |||||||| || || ||||||||||| Sbjct 20637586 CCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20637634 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || |||||||| || ||||| || || || || | || | ||||| | ||| ||||| Sbjct 20621886 GTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACC 20621944 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||||| |||||| || || ||||| || ||||||||||| ||| || ||| Sbjct 20621945 AGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTT 20622004 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || || | ||||||||||| | || | ||||| || ||||| || Sbjct 20622005 CACATTCTCAATAGTATCACTAGGCTCCACCTCCAATGTTATAGTCTTCCCTGTCAATGT 20622064 Query 139747 TTTTACGAATATTTGCAT 139764 ||||||||||| ||||| Sbjct 20622065 CTTTACGAATATCTGCAT 20622082 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || |||||||| || ||||| || || || || | || | ||||| | ||| ||||| Sbjct 20638122 GTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACC 20638180 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||||| |||||| || || ||||| || ||||||||||| ||| || ||| Sbjct 20638181 AGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTT 20638240 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || || | ||||||||||| | || | |||||| || ||||| || Sbjct 20638241 CACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAATGT 20638300 Query 139747 TTTTACGAATATTTGCAT 139764 || || ||||||||||| Sbjct 20638301 CTTCACAAATATTTGCAT 20638318 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || |||||||| || ||||| || || || || | || | ||||| | ||| ||||| Sbjct 20638350 GTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACC 20638408 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||||| |||||| || || ||||| || ||||||||||| ||| || ||| Sbjct 20638409 AGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTT 20638468 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || || | ||||||||||| | || | |||||| || ||||| || Sbjct 20638469 CACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAATGT 20638528 Query 139747 TTTTACGAATATTTGCAT 139764 || || ||||||||||| Sbjct 20638529 CTTCACAAATATTTGCAT 20638546 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || |||||||| || ||||| || || || || | || | ||||| | ||| ||||| Sbjct 20638578 GTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACC 20638636 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||||| |||||| || || ||||| || ||||||||||| ||| || ||| Sbjct 20638637 AGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTT 20638696 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || || | ||||||||||| | || | ||||| || ||||| || Sbjct 20638697 CACATTCTCAATAGTATCACTAGGCTCCACCTCCAATGTTATAGTCTTCCCTGTCAATGT 20638756 Query 139747 TTTTACGAATATTTGCAT 139764 ||||||||||| ||||| Sbjct 20638757 CTTTACGAATATCTGCAT 20638774 >seq862 Length=148971 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 52564 AAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGT 52623 ||||||| | | |||||||| | ||||| | | ||| | |||||||| ||||| Sbjct 30053 AAAAAGGCTCAGTGGGCATTAGATTGGATTGGTGATTCTAAATCTACTTTTGCAGAACGC 30112 Query 52624 CTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATT- 52682 | || || ||||| |||||||||||| |||||||| ||||| ||||| || ||||| Sbjct 30113 TTAGTTGCTTTTGCAGCAGTGGAAGGTGTCTTTTTTTCTGGTAGCTTTGCAGCTATATTC 30172 Query 52683 TTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCG 52742 | | | | || | || | | ||||| || || | |||||||| || || || | Sbjct 30173 TGGCTTAAGAAACGAGGTC-TTATGCCTGGACTGTCTTTTAGCAATGAATTAATCAGTAG 30231 Query 52743 CGACGAAGGAATGCACACAGATTTTGCGTGT 52773 ||||||||| | || ||||| || ||| Sbjct 30232 AGACGAAGGACTACATTGTGATTTCGCTTGT 30262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496058512292000