Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq862 260 2e-64 seq34 105 1e-17 >seq862 Length=148971 Score = 260 bits (288), Expect = 2e-64 Identities = 630/951 (66%), Gaps = 47/951 (5%) Strand=Plus/Minus Query 49649 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 49708 || |||||||||| || ||| |||||||| || || || || || || ||||| | Sbjct 30608 CTCGAGACATAACACCAGCCCGTTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCT 30549 Query 49709 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttt- 49767 ||||||| | |||||| ||||||||||| ||||| |||||| | || ||| || | Sbjct 30548 TTCCTTCGATTGATATGTTTTCCATGAAGTCAAAAGGATTGTCAGAATGATACATCTAAA 30489 Query 49768 ----------ttAAATCC--------CAA-----TTCAGAAA-----TCAATC------- 49792 |||||| ||| |||| || |||| | Sbjct 30488 AGGAAAACAATTAAATAGAAGATTTGCAAACCTTTTCATAACCAAGTTCAACCAGTAGCC 30429 Query 49793 TATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAA 49852 | || |||| |||||| || || ||||| || |||||||| || || | | | Sbjct 30428 TGTCAGCGATAAATTCAATGTACTGACACATCAATTTGCAATTCATCCCAATTAAGCTGA 30369 Query 49853 CTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATC 49912 |||| || || | | | ||| || ||||| || ||||| ||| |||| || || Sbjct 30368 CTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGAACCGCCTCTCTTATTATTGACT 30309 Query 49913 TAACGGTTTCTTCACTCGGTGGATGCA--ATAA-ATGTTTAAACATCAAACATGCGAAAT 49969 ||| ||||| | || || | |||| ||||||||||| | ||| ||||||| Sbjct 30308 CAACACGTTCTT---TGGGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAAT 30252 Query 49970 CGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTA 50029 | || || || || ||||||||||| |||| ||| ||| ||| | ||||| ||||| | Sbjct 30251 CACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAA 30192 Query 50030 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTA 50089 | || || || |||||||| ||||| | ||||| |||||||| |||| ||||| | Sbjct 30191 GACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCCA 30132 Query 50090 CTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT---GTCATGTATCCACTTTT 50146 |||| ||||| ||||| | | ||| || || | | | ||| ||||| | | Sbjct 30131 CTGCTGCAAAAGCAACTAAGCGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATCTA 30072 Query 50147 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC-TATGGCATTAAAGAGATAG 50205 ||||| | ||||| || ||||||| | ||| | |||||| || |||||| || Sbjct 30071 ATGCCCACTGAGCCTTTTTAGCAACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAG 30013 Query 50206 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 50265 | |||| ||| ||||| | || ||||| ||||| | | |||||||| || ||| Sbjct 30012 TCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATCAATAAAGAGTACATTTCAGAGTGA 29953 Query 50266 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || || ||||| | || |||||||| | | |||| | |||||| |||||| Sbjct 29952 ATATTCTCGATAGCTATCTGCATCCCATAGAAACAACGAACCTCTGGAATCTGGACTTCT 29893 Query 50326 GTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 50385 | || ||||| | || || || ||||||||||| || ||||| || || Sbjct 29892 TGGCTGAAGCGTTCCAGGAGGTTCTCGAGGACAATTCCGTCACTCGCCGCAAAGAAGGCT 29833 Query 50386 AATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCT 50445 || || | ||| ||||| ||| | ||| | ||||| ||| |||| Sbjct 29832 AACACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAAATCT 29773 Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 50505 || |||| ||| || |||||||| |||||||| || || | ||||| ||||| | || | Sbjct 29772 TTGGATAAATCGACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATAAAAATGC 29713 Query 50506 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGT 50556 |||| || || |||| || ||||||| || || | | ||| |||||| Sbjct 29712 CAGACATCGTGGTATTCTATGGGGAAAAGGACGAAACGGTGTGGGTTTGGT 29662 >seq34 Length=32115376 Score = 105 bits (116), Expect = 1e-17 Identities = 145/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 80623 GGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA 80682 |||||||||||| || |||||||| ||| ||||||| || | || || | Sbjct 8067210 GGAGAATGTTTCTTGGTTCGAGGATTAATGTAGCAATATAAATCTTCAACAACATCTGAA 8067269 Query 80683 AA--TAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGG 80740 || ||| ||| |||||||||||||||||||| ||||| | | || || ||||||| Sbjct 8067270 AACCTAGATTTC--GTTTCCTTGTGTAGATTTGAAACGGCAAGACGAGCAGCCAAAATGG 8067327 Query 80741 CATAATCTGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 80799 |||| || |||||| |||| | || | | || | | |||||||||||| | |||||| Sbjct 8067328 CATATTCATGATGTTTTGTAAT-CATGCTTGCACATGTCTCGGCTGCCAGATTATCCAAT 8067386 Query 80800 TCTACCGTTGTTACTCCA 80817 ||||| || || |||||| Sbjct 8067387 TCTACAGTAGTCACTCCA 8067404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718260854151400