Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq862 196 5e-45 >seq862 Length=148971 Score = 196 bits (216), Expect = 5e-45 Identities = 451/677 (67%), Gaps = 52/677 (8%) Strand=Plus/Minus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||||||||| ||||| || |||||||||||||| || ||||| | |||||| ||||| Sbjct 30586 TTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCTTTCCTTCGATTGATATGTTTTC 30527 Query 13643 CATAAAATCAAATGGATTT----ATTGA--CAT---------AAACACTTTA-------- 13679 ||| || ||||| ||||| | ||| ||| ||||| || | Sbjct 30526 CATGAAGTCAAAAGGATTGTCAGAATGATACATCTAAAAGGAAAACAATTAAATAGAAGA 30467 Query 13680 -------------TCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATA 13726 ||| |||| ||||| | |||| || ||||| ||||| ||||| || Sbjct 30466 TTTGCAAACCTTTTCATAACCAAGTTCAACCAGTAGCCTGTCAGCGATAAATTCAATGTA 30407 Query 13727 TTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAA 13786 ||| |||| || | |||||||| || |||| | || || | | || |||||| Sbjct 30406 CTGACACATCAATTTGCAATTCATCCCAATTAAGCTGACTGGTAGGGCTTCGGATAAAAA 30347 Query 13787 TTCTTTTTCTAT-AGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAG 13845 || | |||||| ||| || |||||| |||| || || | || || | ||| Sbjct 30346 CTCCTGTTCTATCAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCTTTGG---GAG 30291 Query 13846 GATATTTTAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTC 13902 | | ||| | | |||||||| | || ||| || ||||||||||| || || || |||| Sbjct 30290 GCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTC 30231 Query 13903 TACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAA 13962 |||| || | ||| || ||| | | ||| ||||| | |||||||| || | ||| | Sbjct 30230 TACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGA 30171 Query 13963 ATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATC 14022 |||| || ||||| || ||||| || | || || ||||| ||||| || | ||| | Sbjct 30170 ATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAACTAAGC 30111 Query 14023 GTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttt 14082 ||||| |||| | | ||| | ||||| | | ||||| | || ||||| Sbjct 30110 GTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATCTAATGCCCACTGAGCCTTTTTAG 30051 Query 14083 tAATAAAA--TCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTT--AGTACTT 14138 || | || | ||| || || || || || | | | ||| | ||||| ||| || Sbjct 30050 CAACACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTTTCTTTAGAGTCTTT 29993 Query 14139 GAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATC 14198 | |||||||||||||| | ||| |||||||||||||| || || || ||||||||| Sbjct 29992 G--ATGTATGTATCAATCAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATC 29935 Query 14199 TGAAAACCATAAAAGCA 14215 || | ||||| || || Sbjct 29934 TGCATCCCATAGAAACA 29918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479722693009000