Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq789 107 1e-18 seq14 107 1e-18 >seq789 Length=29961 Score = 107 bits (118), Expect = 1e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | |||||| ||||| | || ||| | || |||| ||||||||| |||||| Sbjct 631 TCCTTCTGTATATTGTAGTCGGAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAA 690 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || || || ||||| || | || | |||||||| || ||| | | || ||| Sbjct 691 ATTAAACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGGATTTTCGCCTTAACTGCT 750 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||| || ||| ||| || |||| |||||||||||||| || || || ||||| Sbjct 751 TCTATTGTATCAGCAGGCTCAACTTCTAGAGTTATAGTTTTTCCAGTAAGTGTCTTCACG 810 Query 43099 AAAATTTGCATTTT 43112 ||||| ||||| || Sbjct 811 AAAATCTGCATCTT 824 >seq14 Length=34464480 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||||||||| | ||| || | ||| | || |||||| || | ||||| || || Sbjct 20621399 GCCTCCACGCAGGCGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGA 20621458 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || |||||| | || ||||| || || || || || ||||| || ||||| || | || Sbjct 20621459 CAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGG 20621518 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || |||| | |||| || | ||| || || | || ||| || Sbjct 20621519 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCAC 20621578 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||| || || || || || | || |||||||| ||||||||| Sbjct 20621579 CTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20621627 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||||||||| | ||| || | ||| | || |||||| || | ||||| || || Sbjct 20637407 GCCTCCACGCAGGCGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGA 20637466 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || |||||| | || ||||| || || || || || ||||| || ||||| || | || Sbjct 20637467 CAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGG 20637526 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || |||| | |||| || | ||| || || | || ||| || Sbjct 20637527 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCAC 20637586 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||| || || || || || | || |||||||| ||||||||| Sbjct 20637587 CTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20637635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381365486571330