Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq862 273 3e-68 seq34 113 6e-20 >seq862 Length=148971 Score = 273 bits (302), Expect = 3e-68 Identities = 637/953 (67%), Gaps = 51/953 (5%) Strand=Plus/Minus Query 41754 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCT 41813 || |||||||||| || ||| |||||||| || || || || || || ||||||| Sbjct 30608 CTCGAGACATAACACCAGCCCGTTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCT 30549 Query 41814 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttt- 41872 ||||||| | |||||| ||||||||||| ||||| |||||| | || ||| || | Sbjct 30548 TTCCTTCGATTGATATGTTTTCCATGAAGTCAAAAGGATTGTCAGAATGATACATCTAAA 30489 Query 41873 ----------ttAAATCC--------CAA-----TTCAGAAA-----TCAATC------- 41897 |||||| ||| |||| || |||| | Sbjct 30488 AGGAAAACAATTAAATAGAAGATTTGCAAACCTTTTCATAACCAAGTTCAACCAGTAGCC 30429 Query 41898 TATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAA 41957 | || ||||| ||||| || || ||||| || |||||||| || || | | | Sbjct 30428 TGTCAGCGATAAATTCAATGTACTGACACATCAATTTGCAATTCATCCCAATTAAGCTGA 30369 Query 41958 CTGGAAGAGCCACAGTAAGAAATTCTTGTTCAAT-AGAGACCGCGTCTGTTATAATAGAT 42016 |||| || || | | | ||| || ||||| || ||| ||||| ||| |||| || || Sbjct 30368 CTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGA-ACCGCCTCTCTTATTATTGAC 30310 Query 42017 CTTACTGTTTCTTCACTCGGTGGATACA--ATAA-ATGTTTAAACATCAAACATGCGAAA 42073 || ||||| | || || | |||| ||||||||||| | ||| |||||| Sbjct 30309 TCAACACGTTCTT---TGGGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAA 30253 Query 42074 TCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 42133 || || || || || || |||||||| |||||||| ||| ||| | ||||| ||||| Sbjct 30252 TCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATA 30193 Query 42134 AGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCT 42193 || || || || |||||||| ||||||| ||||| |||||||| |||| ||||| Sbjct 30192 AGACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCC 30133 Query 42194 ACTGCCGCAAAGGCAA-TAAGTCTCTCTCCATAACCGGCACTG---TCATGTATCCACTT 42249 ||||| ||||| |||| |||| | ||| || || | | ||| ||||| | Sbjct 30132 ACTGCTGCAAAAGCAACTAAGCGT-TCTGCAAAAGTAGATTTAGAATCACCAATCCAATC 30074 Query 42250 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT-ATGGCATTAAAGAGAT 42308 | ||||| | ||||| || ||||||| | ||| || ||||| || |||||| Sbjct 30073 TAATGCCCACTGAGCCTTTTTAGCAACACAAGTTAA-GTTGCTTATGGCGTTGAAGAGAA 30015 Query 42309 AGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAAT 42368 ||| |||| ||| ||||| | |||||||| ||||| | | |||||||| || | Sbjct 30014 AGTCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATCAATAAAGAGTACATTTCAGAGT 29955 Query 42369 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTT 42428 |||| || || || || ||||| | || |||||||| | |||| | || ||| |||| Sbjct 29954 GAATATTCTCGATAGCTATCTGCATCCCATAGAAACAACGAACCTCTGGAATCTGGACTT 29895 Query 42429 CTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACG 42488 || | || ||||| | || ||| || ||||||||||| || ||||| || | Sbjct 29894 CTTGGCTGAAGCGTTCCAGGAGGTTCTCGAGGACAATTCCGTCACTCGCCGCAAAGAAGG 29835 Query 42489 CCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATAT 42548 | || || | ||| |||| ||| | | |||| | ||||| ||| || Sbjct 29834 CTAACACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAAAT 29775 Query 42549 CTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATAT 42608 |||| |||| ||| || ||||| || |||||||| || ||| | ||||| ||||| | || Sbjct 29774 CTTTGGATAAATCGACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATAAAAAT 29715 Query 42609 TCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGT 42661 ||||| ||| || |||| || ||||||| || || | | ||| |||||| Sbjct 29714 GCCAGACATCGTGGTATTCTATGGGGAAAAGGACGAAACGGTGTGGGTTTGGT 29662 >seq34 Length=32115376 Score = 113 bits (124), Expect = 6e-20 Identities = 180/257 (70%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 72231 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA---CTGGCACGAATATT 72287 ||||||||| ||| | ||||| || || | || ||| | ||| ||| ||||| || Sbjct 8065758 AATACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTG---CGAATGTT 8065814 Query 72288 GCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 72347 || ||| || || ||||| || | ||||| || | ||| ||| ||||| ||| Sbjct 8065815 ATGAACATTTAGTCCAATACCCCCGGCATTCTTAGATATAACTGCACATTCTTTTAGCGT 8065874 Query 72348 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 72407 ||| || ||||| ||||||||||| || |||| | | |||||||| || || | || Sbjct 8065875 ATCGTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTCGAAAGCTG 8065934 Query 72408 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 72467 | | ||| || || ||||| | || || ||||| || |||||||| |||||||| Sbjct 8065935 TGGTTTAGGAGTCCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCACTTTTCAGA 8065994 Query 72468 CAGTAGATTGTACGTCT 72484 || || || ||||||| Sbjct 8065995 CATTAAGTTATACGTCT 8066011 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 72706 GGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA 72765 |||||||||||| || |||||||| ||| ||||||| || | || || | Sbjct 8067210 GGAGAATGTTTCTTGGTTCGAGGATTAATGTAGCAATATAAATCTTCAACAACATCTGAA 8067269 Query 72766 AA--TAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 72823 || ||| ||| |||||||||||||||||||| ||||| | | || || | ||||| Sbjct 8067270 AACCTAGATTTC--GTTTCCTTGTGTAGATTTGAAACGGCAAGACGAGCAGCCAAAATGG 8067327 Query 72824 CATAATCTGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCTGCTGCCAGAGTGTCCAAT 72882 |||| || |||||| |||| | || | | || | | || ||||||||| | |||||| Sbjct 8067328 CATATTCATGATGTTTTGTAAT-CATGCTTGCACATGTCTCGGCTGCCAGATTATCCAAT 8067386 Query 72883 TCTACCGTTGTTACTCCA 72900 ||||| || || |||||| Sbjct 8067387 TCTACAGTAGTCACTCCA 8067404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671131775522600