Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq862 178 2e-39 seq34 96.9 5e-15 >seq862 Length=148971 Score = 178 bits (196), Expect = 2e-39 Identities = 490/738 (66%), Gaps = 30/738 (4%) Strand=Plus/Plus Query 125031 TACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTG 125090 || || |||||| ||||| |||||||| || |||||||||||| | ||||| || | Sbjct 29720 TATAAGAAGGCTGTAGCCTCTTTTTGGACTGTGGAAGAGGTCGATTTATCCAAAGATTTC 29779 Query 125091 -TACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGC 125149 ||| |||||||| || || | | || || | || ||||| || | || || Sbjct 29780 ATAC-ATTGGGAGTCT---TTAAAAGTTGGGGAACGTCATTTCATATCCTACGTGTTAGC 29835 Query 125150 CTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGA 125209 ||||||||| | || ||||| ||| ||| || || || ||| ||| ||||| Sbjct 29836 CTTCTTTGCGGCGAGTGACGGAATTGTCCTCGAGAACCTCCTGGAACGCTTCAGCCAAGA 29895 Query 125210 GTTGACCATTCCAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGC 125268 | ||||||||||| |||| ||| || || | || || || ||||| | | Sbjct 29896 AGTCCAGATTCCAGAGGT-TCGTTGTTTCTATGGGATGCAGATAGCTATCGAGAATATTC 29954 Query 125269 ACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACA 125328 |||| |||||||||||| | ||||||| | ||||| || | || | || Sbjct 29955 ACTCTGAAATGTACTCTTTATTGATTGATACATACATCAAAGACTCTAAAGAAAGGGACT 30014 Query 125329 TGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTC 125388 | ||||| ||||| || || | | | | | |||||||||||| |||| ||| Sbjct 30015 TTCTCTTCAACGCCATAAGCAACTTAACTTGTGTTGCTAAAAAGGCTCAGTGGG-CATTA 30073 Query 125389 G-GTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTA 125447 | ||||| | ||| || ||| | | || || | | || || || || || || Sbjct 30074 GATTGGATTGGTGATTCTAAATCTACTTTTGCAGAACGCTTAGTTGCTTTTGCAGCAGTG 30133 Query 125448 GAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTC 125507 || || |||| ||||| ||||| ||||| || || || ||||| ||||| || || || Sbjct 30134 GAAGGTGTCTTTTTTTCTGGTAGCTTTGCAGCTATATTCTGGCTTAAGAAACGAGGTCTT 30193 Query 125508 ATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGAC 125567 ||||| |||||| | || || || || || | ||||||| || ||||| ||||| Sbjct 30194 ATGCCTGGACTGTCTTTTAGCAATGAATTAATCAGTAGAGACGAAGGACTACATTGTGAT 30253 Query 125568 TTTGCCATTCTACTGTTT-CGCA-ACTATC----TGCGTCCCGAGTGCAGATCCAGCGAT 125621 || || |||| ||||| || | |||| || |||| | ||| | | | | Sbjct 30254 TTCGCTTGTCTATTGTTTAAACATATTATCAAAAAGCCTCCCAA----AGAAC--GTGTT 30307 Query 125622 GAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAA 125681 || |||| || ||| || || || ||||||||| |||||| || ||||| Sbjct 30308 GA----GTCA-----ATAATAAGAGAGGCGGTTCTGATAGAACAGGAGTTTTTATCCGAA 30358 Query 125682 TCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTT 125741 ||||||| |||||| | ||||| ||||| ||||| | ||||| ||||||| || ||| Sbjct 30359 GCCCTACCAGTCAGCTTAATTGGGATGAATTGCAAATTGATGTGTCAGTACATTGAATTT 30418 Query 125742 GTGGCAGATCGTCTACTG 125759 | || || | |||||| Sbjct 30419 ATCGCTGACAGGCTACTG 30436 >seq34 Length=32115376 Score = 96.9 bits (106), Expect = 5e-15 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 96851 CAAT-GCAATGTCACGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCG 96909 |||| ||| || ||||||| || || || || || || || ||||| || | ||| Sbjct 8065637 CAATAGCACTG-CACGATATGTCGACCAAGGAGGTAACAAGCGTCCAGGAGCCTTTGCCA 8065579 Query 96910 TCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTG 96969 | ||||| |||||||||||| | || || ||| | || || || ||||| ||||| ||| Sbjct 8065578 TGTACTTAGAACCTTGGCACCCTGATGTGTTTCAGTTCATAGAAATGCGGAAAAATACTG 8065519 Query 96970 GCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCA 97029 || ||||| || || |||||||||| | ||| |||||| | || || ||||||| Sbjct 8065518 GCGCCGAAGAAATTCGTGCACGGGACTTGTTCTTTGCCCTCTGGATACCTGACTTGTTCA 8065459 Query 97030 TGAAGCGCGT 97039 || ||||| Sbjct 8065458 TGCGCCGCGT 8065449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741051002032600