Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq14 111 1e-19 seq789 98.7 7e-16 >seq14 Length=34464480 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| || | || | |||||| | ||| | ||| || || || || |||||||| || Sbjct 20621398 TGCCTCCACGCAGGCGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAG 20621457 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | | ||||| || || || |||||| | ||||||||||||||||| | Sbjct 20621458 ACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAG 20621517 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| ||||||||||| || || ||| || ||| | || || ||||| ||| || Sbjct 20621518 GAATACCTTCTTTGTCTTGGATCTTCGCT-TTCACATTCTCAATAGTATCACTAGGCTCC 20621576 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||| |||| || || ||||| |||||||| Sbjct 20621577 ACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20621626 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| || | || | |||||| | ||| | ||| || || || || |||||||| || Sbjct 20637406 TGCCTCCACGCAGGCGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAG 20637465 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | | ||||| || || || |||||| | ||||||||||||||||| | Sbjct 20637466 ACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAG 20637525 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| ||||||||||| || || ||| || ||| | || || ||||| ||| || Sbjct 20637526 GAATACCTTCTTTGTCTTGGATCTTCGCT-TTCACATTCTCAATAGTATCACTAGGCTCC 20637584 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||| |||| || || ||||| |||||||| Sbjct 20637585 ACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20637634 Score = 105 bits (116), Expect = 5e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || ||||| || |||||||| || ||| | | | ||||| || || Sbjct 20621651 ATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 20621710 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || |||||| | ||||||||||||||||| ||||| ||||||||||| || || Sbjct 20621711 CTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 20621770 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || ||| | || || ||||| ||| || || || || || || || ||||| | Sbjct 20621771 CGCT-TTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAG 20621829 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || ||||| |||||||| Sbjct 20621830 TCAACGTCTTCACAAATATTTGCAT 20621854 Score = 105 bits (116), Expect = 5e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || ||||| || |||||||| || ||| | | | ||||| || || Sbjct 20637659 ATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 20637718 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || |||||| | ||||||||||||||||| ||||| ||||||||||| || || Sbjct 20637719 CTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 20637778 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || ||| | || || ||||| ||| || || || || || || || ||||| | Sbjct 20637779 CGCT-TTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAG 20637837 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || ||||| |||||||| Sbjct 20637838 TCAACGTCTTCACAAATATTTGCAT 20637862 Score = 105 bits (116), Expect = 5e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || ||||| || |||||||| || ||| | | | ||||| || || Sbjct 20637887 ATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 20637946 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || |||||| | ||||||||||||||||| ||||| ||||||||||| || || Sbjct 20637947 CTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 20638006 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || ||| | || || ||||| ||| || || || || || || || ||||| | Sbjct 20638007 CGCT-TTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAG 20638065 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || ||||| |||||||| Sbjct 20638066 TCAACGTCTTCACAAATATTTGCAT 20638090 Score = 105 bits (116), Expect = 5e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || ||||| || |||||||| || ||| | | | ||||| || || Sbjct 20638115 ATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 20638174 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || |||||| | ||||||||||||||||| ||||| ||||||||||| || || Sbjct 20638175 CTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 20638234 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || ||| | || || ||||| ||| || || || || || || || ||||| | Sbjct 20638235 CGCT-TTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAG 20638293 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || ||||| |||||||| Sbjct 20638294 TCAATGTCTTCACAAATATTTGCAT 20638318 Score = 105 bits (116), Expect = 5e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || ||||| || |||||||| || ||| | | | ||||| || || Sbjct 20638343 ATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 20638402 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || |||||| | ||||||||||||||||| ||||| ||||||||||| || || Sbjct 20638403 CTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 20638462 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || ||| | || || ||||| ||| || || || || || || || ||||| | Sbjct 20638463 CGCT-TTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAG 20638521 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || ||||| |||||||| Sbjct 20638522 TCAATGTCTTCACAAATATTTGCAT 20638546 Score = 102 bits (112), Expect = 6e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || ||||| || |||||||| || ||| | | | ||||| || || Sbjct 20621879 ATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 20621938 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || |||||| | ||||||||||||||||| ||||| ||||||||||| || || Sbjct 20621939 CTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 20621998 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || ||| | || || ||||| ||| || || || || || || || || |||| Sbjct 20621999 CGCT-TTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAATGTTATAGTCTTCCCTG 20622057 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || ||||| || || ||||| Sbjct 20622058 TCAATGTCTTTACGAATATCTGCAT 20622082 Score = 102 bits (112), Expect = 6e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || ||||| || |||||||| || ||| | | | ||||| || || Sbjct 20638571 ATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 20638630 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || |||||| | ||||||||||||||||| ||||| ||||||||||| || || Sbjct 20638631 CTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 20638690 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || ||| | || || ||||| ||| || || || || || || || || |||| Sbjct 20638691 CGCT-TTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAATGTTATAGTCTTCCCTG 20638749 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || ||||| || || ||||| Sbjct 20638750 TCAATGTCTTTACGAATATCTGCAT 20638774 >seq789 Length=29961 Score = 98.7 bits (108), Expect = 7e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || || || ||||| ||||| ||| ||| ||| | ||||| | ||| Sbjct 618 ATGGAGTGTTGATTCCTTCTGTATATTGTAGTCGGAAAGAGTTCGTCCATCTTCCAGTTG 677 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||||||| | || |||||||||||||| ||| || |||||||| || ||||| Sbjct 678 TTTGCCAGCAAAAATTAAACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGGATTTT 737 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || |||||| ||||| | || || |||| || || ||||| || || Sbjct 738 CGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGAGTTATAGTTTTTCCAGT 797 Query 15340 CAGAGTTTTTACAAAAATTTGCATATT 15366 || || || || ||||| ||||| || Sbjct 798 AAGTGTCTTCACGAAAATCTGCATCTT 824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362175293557785