Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq789 109 4e-19 seq1 105 4e-18 seq14 89.7 3e-13 >seq789 Length=29961 Score = 109 bits (120), Expect = 4e-19 Identities = 151/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||| | ||| || || || ||||||||||| || || | | | || || |||| ||| Sbjct 618 ATGGAGTGTTGATTCCTTCTGTATATTGTAGTCGGAAAGAGTTCGTCCATCTTCCAGTTG 677 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCGCTAAT 33282 || ||| ||| ||||||||||| ||||| | || ||||||||||| || | | | Sbjct 678 TTTGCCAGCAAAAATTAAACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGGATTTT 737 Query 33283 CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCC 33342 |||| || |||| || || || || || | ||| || |||||||| |||||||| Sbjct 738 CGCC---TTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGAGTTATAGTTTTTCC 794 Query 33343 CGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||||| || || |||||||| ||||| || Sbjct 795 AGTAAGTGTCTTCACGAAAATCTGCATCTT 824 >seq1 Length=65476681 Score = 105 bits (116), Expect = 4e-18 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | || |||||||| || ||||||||||||||||| || | Sbjct 54270772 CGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTGCGACCA 54270713 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || || | ||||| ||| ||| || | |||||| || || | || || |||||||| Sbjct 54270712 TCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGGAATCCCTTCTTTA 54270653 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | ||| ||||| | || | ||| |||| ||| Sbjct 54270652 TCTTGGATCTTGGCC---TTCACATTCTCAATGGTGTCACTCGGCTCAACTTCCAAAGTG 54270596 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || || | ||||| ||||| |||||||| Sbjct 54270595 ATCGTTTTACCAGTTAATGTTTTCACGAATATTTGCAT 54270558 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/219 (69%), Gaps = 7/219 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTT-TTGTATATTGTAATCAGACAAATTGAGTTG 33213 ||||||||||| || | || |||||||| ||| |||| |||||||||| || | Sbjct 54271001 CGCAACACCAAGTGAAGAGTGGACTCTTTCTTGGATATGTAAATCAGACAATGTGCGACC 54270942 Query 33214 GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273 || || | ||||| ||| ||| || | |||||| || || | || || |||||||| Sbjct 54270941 ATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGGAATCCCTTCTTT 54270882 Query 33274 ---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 || | | | ||| || || | | ||| ||||| | || | ||| |||| ||| Sbjct 54270881 ATCTTGGATCTTGGCC---TTCACATTCTCAATGGTGTCACTCGGCTCAACTTCCAAAGT 54270825 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || || | || || || ||||| ||||| Sbjct 54270824 GATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 54270786 >seq14 Length=34464480 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||||| ||||||||||| || || ||||| ||||||| | | || || ||||| || Sbjct 20621879 ATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 20621938 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGC 33285 ||| ||| || || |||||||| ||||| | || || |||||||| || ||| Sbjct 20621939 CTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 20621998 Query 33286 CTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGT 33345 | ||| || | | ||| || || | || | || |||| ||||| || || || || Sbjct 20621999 CGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAATGTTATAGTCTTCCCTGT 20622058 Query 33346 AAGAGTTTTTACGAAAATTTGCAT 33369 | || |||||||| || ||||| Sbjct 20622059 CAATGTCTTTACGAATATCTGCAT 20622082 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||||| ||||||||||| || || ||||| ||||||| | | || || ||||| || Sbjct 20638571 ATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 20638630 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGC 33285 ||| ||| || || |||||||| ||||| | || || |||||||| || ||| Sbjct 20638631 CTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 20638690 Query 33286 CTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGT 33345 | ||| || | | ||| || || | || | || |||| ||||| || || || || Sbjct 20638691 CGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAATGTTATAGTCTTCCCTGT 20638750 Query 33346 AAGAGTTTTTACGAAAATTTGCAT 33369 | || |||||||| || ||||| Sbjct 20638751 CAATGTCTTTACGAATATCTGCAT 20638774 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||||| ||||||||||| || || ||||| ||||||| | | || || ||||| || Sbjct 20621651 ATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 20621710 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGC 33285 ||| ||| || || |||||||| ||||| | || || |||||||| || ||| Sbjct 20621711 CTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 20621770 Query 33286 CTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGT 33345 | ||| || | | ||| || || | || | || |||| || ||||| || || || Sbjct 20621771 CGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGT 20621830 Query 33346 AAGAGTTTTTACGAAAATTTGCAT 33369 | || || || || |||||||| Sbjct 20621831 CAACGTCTTCACAAATATTTGCAT 20621854 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||||| ||||||||||| || || ||||| ||||||| | | || || ||||| || Sbjct 20637659 ATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 20637718 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGC 33285 ||| ||| || || |||||||| ||||| | || || |||||||| || ||| Sbjct 20637719 CTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 20637778 Query 33286 CTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGT 33345 | ||| || | | ||| || || | || | || |||| || ||||| || || || Sbjct 20637779 CGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGT 20637838 Query 33346 AAGAGTTTTTACGAAAATTTGCAT 33369 | || || || || |||||||| Sbjct 20637839 CAACGTCTTCACAAATATTTGCAT 20637862 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||||| ||||||||||| || || ||||| ||||||| | | || || ||||| || Sbjct 20637887 ATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 20637946 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGC 33285 ||| ||| || || |||||||| ||||| | || || |||||||| || ||| Sbjct 20637947 CTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 20638006 Query 33286 CTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGT 33345 | ||| || | | ||| || || | || | || |||| || ||||| || || || Sbjct 20638007 CGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGT 20638066 Query 33346 AAGAGTTTTTACGAAAATTTGCAT 33369 | || || || || |||||||| Sbjct 20638067 CAACGTCTTCACAAATATTTGCAT 20638090 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||||| ||||||||||| || || ||||| ||||||| | | || || ||||| || Sbjct 20638115 ATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 20638174 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGC 33285 ||| ||| || || |||||||| ||||| | || || |||||||| || ||| Sbjct 20638175 CTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 20638234 Query 33286 CTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGT 33345 | ||| || | | ||| || || | || | || |||| || ||||| || || || Sbjct 20638235 CGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGT 20638294 Query 33346 AAGAGTTTTTACGAAAATTTGCAT 33369 | || || || || |||||||| Sbjct 20638295 CAATGTCTTCACAAATATTTGCAT 20638318 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||||| ||||||||||| || || ||||| ||||||| | | || || ||||| || Sbjct 20638343 ATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 20638402 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGC 33285 ||| ||| || || |||||||| ||||| | || || |||||||| || ||| Sbjct 20638403 CTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 20638462 Query 33286 CTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGT 33345 | ||| || | | ||| || || | || | || |||| || ||||| || || || Sbjct 20638463 CGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGT 20638522 Query 33346 AAGAGTTTTTACGAAAATTTGCAT 33369 | || || || || |||||||| Sbjct 20638523 CAATGTCTTCACAAATATTTGCAT 20638546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318774161684730