Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq14 104 2e-17 seq1 89.7 4e-13 >seq14 Length=34464480 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||| || || || || || ||||| ||||| ||||| |||| | |||||||| Sbjct 20621470 CATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTT 20621529 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| || || ||| || | ||| |||||| |||||||| || | ||| | Sbjct 20621530 TGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGA 20621589 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || ||||| || || |||||||||||||||||||| Sbjct 20621590 TCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20621626 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||| || || || || || ||||| ||||| ||||| |||| | |||||||| Sbjct 20621698 CATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTT 20621757 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| || || ||| || | ||| |||||| |||||||| || | ||| | Sbjct 20621758 TGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGA 20621817 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || ||||| || || |||||||||||||||||||| Sbjct 20621818 TCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20621854 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||| || || || || || ||||| ||||| ||||| |||| | |||||||| Sbjct 20637478 CATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTT 20637537 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| || || ||| || | ||| |||||| |||||||| || | ||| | Sbjct 20637538 TGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGA 20637597 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || ||||| || || |||||||||||||||||||| Sbjct 20637598 TCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20637634 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||| || || || || || ||||| ||||| ||||| |||| | |||||||| Sbjct 20637706 CATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTT 20637765 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| || || ||| || | ||| |||||| |||||||| || | ||| | Sbjct 20637766 TGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGA 20637825 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || ||||| || || |||||||||||||||||||| Sbjct 20637826 TCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20637862 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||| || || || || || ||||| ||||| ||||| |||| | |||||||| Sbjct 20637934 CATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTT 20637993 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| || || ||| || | ||| |||||| |||||||| || | ||| | Sbjct 20637994 TGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGA 20638053 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || ||||| || || |||||||||||||||||||| Sbjct 20638054 TCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20638090 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||| || || || || || ||||| ||||| ||||| |||| | |||||||| Sbjct 20638162 CATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTT 20638221 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| || || ||| || | ||| |||||| |||||||| || | ||| | Sbjct 20638222 TGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGA 20638281 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || ||||| || || |||||||||||||||||||| Sbjct 20638282 TCGTCTTACCAGTCAATGTCTTCACAAATATTTGCAT 20638318 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||| || || || || || ||||| ||||| ||||| |||| | |||||||| Sbjct 20638390 CATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTT 20638449 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| || || ||| || | ||| |||||| |||||||| || | ||| | Sbjct 20638450 TGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGA 20638509 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || ||||| || || |||||||||||||||||||| Sbjct 20638510 TCGTCTTACCAGTCAATGTCTTCACAAATATTTGCAT 20638546 >seq1 Length=65476681 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 |||||||| || || ||| |||||| || ||||| ||||| ||| || |||| Sbjct 54270769 AACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTGCGACCATCT 54270710 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | || || || ||||| |||| ||||| || || | || | |||||||||||| Sbjct 54270709 TCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGGAATCCCTTCTTTATCT 54270650 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || || || || | ||| || || |||||| || || | || || ||| Sbjct 54270649 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTCGGCTCAACTTCCAAAGTGATCGTT 54270590 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| ||||| || ||||| ||||||||||| Sbjct 54270589 TTACCAGTTAATGTTTTCACGAATATTTGCAT 54270558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354773773390980