Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq862 251 6e-62 >seq862 Length=148971 Score = 251 bits (278), Expect = 6e-62 Identities = 494/722 (68%), Gaps = 24/722 (3%) Strand=Plus/Minus Query 12983 CTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTT 13042 |||||||| | ||| || |||||||| ||| || | || ||||| || ||||| | Sbjct 30429 CTGTCAGCGATAAATTCAATGTACTGACACATCAATTTGCAATTCATCCCAATTAAGCTG 30370 Query 13043 ACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCT 13102 || || | ||||| | |||||| | | |||||| ||| || || | | ||| | Sbjct 30369 ACTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGAACCGCCTCTCTTATTAT-TGA 30311 Query 13103 CTTATTACGTTCTCTAATGGAGGATTT--GATAG-ATGCTTAAACATCATACATGCAAAA 13159 || | ||||||| | ||||| ||| |||| ||| ||||||| | ||| || ||| Sbjct 30310 CTCAACACGTTCTTTG--GGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAA 30253 Query 13160 TCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATA 13219 ||||| || | |||||| |||||||| |||| || || ||| | || || |||||| Sbjct 30252 TCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATA 30193 Query 13220 AGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCA 13279 || |||||||| |||| ||| |||||||| ||||| ||| |||||||| | ||||| Sbjct 30192 AGACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCC 30133 Query 13280 ACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTC-TCTATCCACTT 13338 ||||||||||| || | || | ||| || | ||| |||| | || | ||||| | Sbjct 30132 ACTGCTGCAAAAGCAACTAAGCGTTCTGCAAAAGTA-GATTTAGAATCACCAATCCAATC 30074 Query 13339 TCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATA 13398 | ||||| | || |||| ||| || | | || ||| ||||| || | | | Sbjct 30073 TAATGCCCACTGAGCCTTTTTAGCAACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAA 30014 Query 13399 AtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATG 13458 | |||| ||| |||| || || ||||| |||||||| |||||||| || || Sbjct 30013 GTCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATCAATAAAGAGTACATTTCAGAGTG 29954 Query 13459 AATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 |||||| || || ||||| || | ||||| ||||| | | |||||| | ||| ||||| Sbjct 29953 AATATTCTCGATAGCTATCTGCATCCCATAGAAACAACGAACCTCTGGAATCTGGACTTC 29894 Query 13519 GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC 13578 | || | ||| | ||| ||| || || |||||||| || ||||| || || Sbjct 29893 TTGGCTGAAGCGTTCCAGGAGGTTCTCGAGGACAATTCCGTCACTCGCCGCAAAGAAGGC 29834 Query 13579 AAGTATGT-GCTTAATAAAttttttttCGTTTTCTGACAACTTTAA-------CCAATCT 13630 | | || | || ||| | |||| | ||||||| | ||||| | Sbjct 29833 TAACACGTAGGATATGAAA-----TGACGTTCCC---CAACTTTTAAAGACTCCCAATGT 29782 Query 13631 GGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTA 13690 |||||||| |||||||| ||||| || || ||||||||||| || |||||||||||| Sbjct 29781 ATGAAATCTTTGGATAAATCGACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTA 29722 Query 13691 TA 13692 || Sbjct 29721 TA 29720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430977751450770