Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq42 86.0 7e-12 seq1 84.2 3e-11 >seq42 Length=59508269 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 19394 CAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGT 19453 |||||||| || ||||| || ||||||||||||||||||||| || || || || Sbjct 21232229 CAAAAAGGTACTTGTGGAATTCGTTATCGTCAAGAAGATATGCCGTTCACATGTGAAGGA 21232288 Query 19454 ATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || || ||| |||||||||| ||||| ||| |||| ||||| ||||| Sbjct 21232289 ATTACACCAGATATTATTATTAATCCACACGCTATTCCTAGTCGTATGAC 21232338 >seq1 Length=65476681 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/159 (73%), Gaps = 10/159 (6%) Strand=Plus/Plus Query 7225 TCACCTTCTTCACGATGATTAAATCCTAATCGATTTAAATTAGATTTT---GATCCATAA 7281 |||||||||||||| | | ||||||| | || || |||| ||| ||||||| Sbjct 18604745 TCACCTTCTTCACGCTCAGTAAATCCCAGTCCATCTAAAA---ATTCACGAGATCCATTT 18604801 Query 7282 GCATCCCAAATATGTACAGAtttttttGATAAATTTAA--AGAATTTGTAGATCCTTTAA 7339 |||||||| | ||||||| || |||| | || | ||||||||||||||| || Sbjct 18604802 GCATCCCAGAAATGTACA--TTCTTTTCCGCCAGTTCACGAGAATTTGTAGATCCACGAA 18604859 Query 7340 GGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACA 7378 |||||||| || |||||||| ||||| || |||||| Sbjct 18604860 TAAACCATAATAGCTCTTCTACGATTCCGCGAAAAAACA 18604898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595865408166000