Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq14 91.5 8e-14 seq42 89.7 3e-13 >seq14 Length=34464480 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||| |||||||||||||||||||||||| || Sbjct 3971809 AAGTTGGCTCCGGAGGGGATCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAAC 3971750 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||| | |||| Sbjct 3971749 CAACTGAGCTACGGAGCCG 3971731 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||| |||||||||||||||||||||||| || Sbjct 3974384 AAGTTGGCTCCAGAGGGGATCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAAC 3974325 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||| | |||| Sbjct 3974324 CAACTGAGCTACGGAGCCG 3974306 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||| |||||||||||||||||||||||| || Sbjct 3975970 AAGTTGGCTCCGGAGGGGATCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAAC 3975911 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||| | |||| Sbjct 3975910 CAACTGAGCTACGGAGCCG 3975892 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||| |||||||||||||||||||||||| || Sbjct 3979127 AAGTTGGCTCCGGAGGGGATCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAAC 3979068 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||| | |||| Sbjct 3979067 CAACTGAGCTACGGAGCCG 3979049 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||| |||||||||||||||||||||||| || Sbjct 3980706 AAGTTGGCTCCGGAGGGGATCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAAC 3980647 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||| | |||| Sbjct 3980646 CAACTGAGCTACGGAGCCG 3980628 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||| |||||||||||||||||||||||| || Sbjct 3982271 AAGTTGGCTCCGGAGGGGATCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAAC 3982212 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||| | |||| Sbjct 3982211 CAACTGAGCTACGGAGCCG 3982193 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||| |||||||||||||||||||||||| || Sbjct 3983848 AAGTTGGCTCCGGAGGGGATCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAAC 3983789 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||| | |||| Sbjct 3983788 CAACTGAGCTACGGAGCCG 3983770 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||| |||||||||||||||||||||||| || Sbjct 3985426 AAGTTGGCTCCGGAGGGGATCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAAC 3985367 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||| | |||| Sbjct 3985366 CAACTGAGCTACGGAGCCG 3985348 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||| |||||||||||||||||||||||| || Sbjct 3987009 AAGTTGGCTCCGGAGGGGATCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAAC 3986950 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||| | |||| Sbjct 3986949 CAACTGAGCTACGGAGCCG 3986931 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||| |||||||||||||||||||||||| || Sbjct 3988588 AAGTTGGCTCCGGAGGGGATCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAAC 3988529 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||| | |||| Sbjct 3988528 CAACTGAGCTACGGAGCCG 3988510 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||| |||||||||||||||||||||||| || Sbjct 3990180 AAGTTGGCTCCGGAGGGGATCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAAC 3990121 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||| | |||| Sbjct 3990120 CAACTGAGCTACGGAGCCG 3990102 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||| |||||||||||||||||||||||| || Sbjct 3991774 AAGTTGGCTCCGGAGGGGATCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAAC 3991715 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||| | |||| Sbjct 3991714 CAACTGAGCTACGGAGCCG 3991696 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||| |||||||||||||||||||||||| || Sbjct 3993331 AAGTTGGCTCCGGAGGGGATCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAAC 3993272 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||| | |||| Sbjct 3993271 CAACTGAGCTACGGAGCCG 3993253 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||| |||||||||||||||||||||||| || Sbjct 3994720 AAGTTGGCTCCAGAGGGGATCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAAC 3994661 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||| | |||| Sbjct 3994660 CAACTGAGCTACGGAGCCG 3994642 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||| |||||||||||||||||||||||| || Sbjct 3996295 AAGTTGGCTCCGGAGGGGATCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAAC 3996236 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||| | |||| Sbjct 3996235 CAACTGAGCTACGGAGCCG 3996217 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||| |||||||||||||||||||||||| || Sbjct 3997884 AAGTTGGCTCCGGAGGGGATCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAAC 3997825 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||| | |||| Sbjct 3997824 CAACTGAGCTACGGAGCCG 3997806 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||| |||||||||||||||||||||||| || Sbjct 3999475 AAGTTGGCTCCGGAGGGGATCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAAC 3999416 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||| | |||| Sbjct 3999415 CAACTGAGCTACGGAGCCG 3999397 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||| |||||||||||||||||||||||| || Sbjct 4001057 AAGTTGGCTCCGGAGGGGATCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAAC 4000998 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||| | |||| Sbjct 4000997 CAACTGAGCTACGGAGCCG 4000979 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||| |||||||||||||||||||||||| || Sbjct 4002644 AAGTTGGCTCCGGAGGGGATCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAAC 4002585 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||| | |||| Sbjct 4002584 CAACTGAGCTACGGAGCCG 4002566 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||| |||||||||||||||||||||||| || Sbjct 4004233 AAGTTGGCTCCGGAGGGGATCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAAC 4004174 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||| | |||| Sbjct 4004173 CAACTGAGCTACGGAGCCG 4004155 Score = 86.0 bits (94), Expect = 3e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||| ||| ||||| |||||||||||||||||||||||| || Sbjct 3977546 AAGTTGGCTCCGGAGGGGATCGGACCCTCGACATTCGCGTTATTAGCACGACGCTCTAAC 3977487 Query 11512 CAACTGAGCTA 11522 ||||||||||| Sbjct 3977486 CAACTGAGCTA 3977476 >seq42 Length=59508269 Score = 89.7 bits (98), Expect = 3e-13 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| | | Sbjct 33970438 GGATCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTACGGAG 33970379 Query 11528 CCG 11530 ||| Sbjct 33970378 CCG 33970376 Lambda K H 0.640 0.410 0.922 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261488379572260