Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 176 7e-40 seq690 138 2e-28 seq39 98.7 2e-16 >seq1 Length=65476681 Score = 176 bits (194), Expect = 7e-40 Identities = 202/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| | ||||||| | |||| || || |||||||| || ||||||||||| || || Sbjct 11553764 GCTAAGAGACATCGCA-AGGTCTTACGTGACAACATCCAGGGTATCACCAAGCCTGCAAT 11553822 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||||||||| ||||| || ||||| | || |||||| |||| || |||| Sbjct 11553823 CCGTCGTCTGGCTCGTCGAGGTGGTGTGAAGCGCATTTCAGGATTGATCTACGAGGAGAC 11553882 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| ||||| | || || ||| ||| |||| |||||| || ||| || || Sbjct 11553883 TCGTGGTGTACTGAAGGTGTTTCTGGAGAACGTGATCCGTGATGCAGTCACCTACACGGA 11553942 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| || || | ||||| | || || || |||||||| ||||| Sbjct 11553943 ACATGCCAAGAGGAAGACAGTGACAGCTATGGACGTTGTGTACGCTTTGAAACGCCAAGG 11554002 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | || ||||| || |||||| Sbjct 11554003 TCGTACTTTGTACGGTTTCGGTGGTTAAT 11554031 Score = 176 bits (194), Expect = 7e-40 Identities = 202/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| | ||||||| | |||| || || |||||||| || ||||||||||| || || Sbjct 11557501 GCTAAGAGACATCGCA-AGGTCTTACGTGACAACATCCAGGGTATCACCAAGCCTGCAAT 11557443 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||||||||| ||||| || ||||| | || |||||| |||| || |||| Sbjct 11557442 CCGTCGTCTGGCTCGTCGAGGTGGTGTGAAGCGCATTTCAGGATTGATCTACGAGGAGAC 11557383 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| ||||| | || || ||| ||| |||| |||||| || ||| || || Sbjct 11557382 TCGTGGTGTACTGAAGGTGTTTCTGGAGAACGTGATCCGTGATGCAGTCACCTACACGGA 11557323 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| || || | ||||| | || || || |||||||| ||||| Sbjct 11557322 ACATGCCAAGAGGAAGACAGTGACAGCTATGGACGTTGTGTACGCTTTGAAACGCCAAGG 11557263 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | || ||||| || |||||| Sbjct 11557262 TCGTACTTTGTACGGTTTCGGTGGTTAAT 11557234 Score = 172 bits (190), Expect = 9e-39 Identities = 201/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| | || |||| | |||| || || |||||||| || ||||||||||| || || Sbjct 11538325 GCTAAGAGACACCGCA-AGGTCTTACGTGACAACATCCAGGGTATCACCAAGCCTGCAAT 11538383 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||||||||| ||||| || ||||| | || |||||| |||| || |||| Sbjct 11538384 CCGTCGTCTGGCTCGTCGAGGTGGTGTGAAGCGCATTTCAGGATTGATCTACGAGGAGAC 11538443 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| ||||| | || || ||| ||| |||| |||||| || ||| || || Sbjct 11538444 TCGTGGTGTACTGAAGGTGTTTCTGGAGAACGTGATCCGTGATGCAGTCACCTACACGGA 11538503 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| || || | ||||| | || || || |||||||| ||||| Sbjct 11538504 ACATGCCAAGAGGAAGACAGTGACAGCTATGGACGTTGTGTACGCTTTGAAACGCCAAGG 11538563 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | || ||||| || |||||| Sbjct 11538564 TCGTACTTTGTACGGTTTCGGTGGTTAAT 11538592 Score = 140 bits (154), Expect = 5e-29 Identities = 187/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | || || || || ||||||||||| || ||||| ||||| Sbjct 10983009 GCCAAGCGTCATAGAAAGGTGCTGCGCGACAATATCCAAGGAATTACTAAGCCTGCTATT 10982950 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| || ||||| ||||| || || || || | ||||| ||| |||| || || | | Sbjct 10982949 CGTCGCCTTGCTCGCCGTGGAGGTGTAAAACGCATTTCTGGTTTGATCTACGAGGAAACT 10982890 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||||| | | ||||| | ||| || || || || || Sbjct 10982889 CGTGGTGTGTTGAAAGTATTCCTGGAAAATGTTATTCGTGACGCCGTCACATACACGGAA 10982830 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||||| || ||||| || | ||||| | || ||||| |||||||| || || Sbjct 10982829 CATGCCAAACGGAAAACTGTAACTGCTATGGACGTGGTGTATGCTTTGAAACGCCAGGGT 10982770 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | ||||||||||| Sbjct 10982769 CGTACATTGTATGGTTTTGG 10982750 >seq690 Length=2099804 Score = 138 bits (152), Expect = 2e-28 Identities = 177/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || | |||||| || ||||| ||||| | |||||||||||||||||| ||||||| Sbjct 1482513 CGTGACATCATCCAGGGTATCACAAAGCCTGAAATCCGTCGTCTGGCTCGTGGTGGTGGT 1482454 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||||| | || |||||| |||| || |||| ||||| ||| ||||| | || || Sbjct 1482453 GTGAAGCGCATTTCAGGATTGATCTACGAGGAGACTCGTGGTGTACTGAAGTTGTTTCTG 1482394 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||||| || | |||| || ||| || || | || || ||||| || || Sbjct 1482393 GAGAACGTTAGCCGTTATGCAGTCACCTACACGGAACCTGCCAAGAAGAAGACAGTAACA 1482334 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | ||||| | || || || |||||||| ||||| |||| | || ||||| || || Sbjct 1482333 GCTATGGACGTTGTGTACGCTTTGAAACGCCAAGGTCGTACTTTGTACGGTTTCGGTGGT 1482274 Query 16697 TAAT 16700 |||| Sbjct 1482273 TAAT 1482270 >seq39 Length=20039393 Score = 98.7 bits (108), Expect = 2e-16 Identities = 167/241 (69%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||| || || |||||||||||| ||||||||||| | || Sbjct 12860439 GACAACATCCATGGTATCACAAAACCTTTAATCCGTCGTCTGACTCGTCGTGGT-GTGTG 12860381 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| | || ||||| ||| || |||| ||||| ||| || || | | || | Sbjct 12860380 AAGCGCATTTCACGATTGATCTGCGAGGAGACTCGTGGTGTACTGTAGGTGATTCTGGAA 12860321 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| ||| |||||| || || || || || || || | ||| | | || | Sbjct 12860320 AACGTGATCTGTGATGCAGTCACGTACACGGAACATGCCAAGAGGAAGTCAATGACAGCT 12860261 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || || || ||||||| |||||| |||| | || ||||| || ||||| Sbjct 12860260 ATGGACGTGGTGTACGCTTTGAAACATCAAGGTCGTACTTTGTACGGTTTCGGCGGTTAA 12860201 Query 16700 T 16700 | Sbjct 12860200 T 12860200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074390838305