Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq862 129 6e-25 >seq862 Length=148971 Score = 129 bits (142), Expect = 6e-25 Identities = 574/910 (63%), Gaps = 56/910 (6%) Strand=Plus/Minus Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 |||||| |||| ||||| || || || || || ||||||||||| | |||||| ||| Sbjct 30586 TTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCTTTCCTTCGATTGATATGTTTTC 30527 Query 21247 CATAAAATCAAATGGATTTTCAGATT-----------------------TAAATA----- 21278 ||| || ||||| ||||| ||||| | |||||| Sbjct 30526 CATGAAGTCAAAAGGATTGTCAGAATGATACATCTAAAAGGAAAACAATTAAATAGAAGA 30467 Query 21279 -TT-------TTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATA 21330 || || | | |||| ||||| | || || || || | |||||| || || Sbjct 30466 TTTGCAAACCTTTTCATAACCAAGTTCAACCAGTAGCCTGTCAGCGATAAATTCAATGTA 30407 Query 21331 TTGACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAA 21390 |||||||| |||| |||||||| || || || | || || || |||| | ||||| Sbjct 30406 CTGACACATCAATTTGCAATTCATCCCAATTAAGCTGACTGGTAGGGCTTCGGATAAAAA 30347 Query 21391 AGATTTTTCTAT-AGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGGG 21449 | |||||| ||| || || || ||||| | | | | | || || ||| Sbjct 30346 CTCCTGTTCTATCAGA-ACCGCCTCTCTTATTAT-----TGACTCAACACGTTCTTTGGG 30293 Query 21450 GA----TACAATAAT-TGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATC 21504 | ||||| |||||||||| | ||| || ||||||||||| | ||||| || Sbjct 30292 AGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAATCACAATGTAGTCCTTCGTC 30233 Query 21505 CCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCA 21564 ||||| ||||||||||| ||| | | || ||||| | |||| || || | ||| Sbjct 30232 TCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCA 30173 Query 21565 AAATATTGACGCAAATGCT-CCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTA 21623 ||||| | ||||| ||| || ||||| || | || || || || ||||| ||||||| Sbjct 30172 GAATATAGCTGCAAA-GCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAACTA 30114 Query 21624 ATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTT 21683 | ||||| | | ||||||| ||| ||||| | | |||||| | ||||||| Sbjct 30113 AGCGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATCTAATGCCCACTGAGCCTTTT 30054 Query 21684 CTTTAATACAA--TCAATTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACA-T 21740 || |||| | | ||| | || || || || ||| | |||| | || | | Sbjct 30053 TAGCAACACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTTTC-TTTAGAGT 29997 Query 21741 CGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTA 21800 | | ||| | ||||||||||| || ||||| || || |||| Sbjct 29996 CTTTGATGTATGTATCAATCAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTA 29937 Query 21801 TCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAG 21860 |||| | || || ||||| | |||||| | || || || || |||| Sbjct 29936 TCTGCATCCCATAGAAACAACGAACCTCTGGAATCTGGACTTCTTGGCTGAAGCGTTCCA 29877 Query 21861 CCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAA 21920 | ||| || || ||||| ||||| || ||||| || || || | | ||| | Sbjct 29876 GGAGGTTCTCGAGGACAATTCCGTCACTCGCCGCAAAGAAGGCTAACACGTAGGATATGA 29817 Query 21921 AATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTT 21980 ||| ||||| | || |||| | ||||| || |||||||| |||||||| || | Sbjct 29816 AATGACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAAATCTTTGGATAAATCGACCT 29757 Query 21981 CTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATA 22040 |||| |||||||| || | |||||| ||||| | | ||||| ||| | ||| Sbjct 29756 CTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATT 29697 Query 22041 TTATTGGAAA 22050 ||| || || Sbjct 29696 CTATGGGGAA 29687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531894915847400