Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq862 244 1e-59 seq34 102 1e-16 >seq862 Length=148971 Score = 244 bits (270), Expect = 1e-59 Identities = 637/966 (66%), Gaps = 49/966 (5%) Strand=Plus/Minus Query 32993 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 33052 || |||||||||| || ||| |||||||| || || || || || || ||||| | Sbjct 30608 CTCGAGACATAACACCAGCCCGTTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCT 30549 Query 33053 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttt- 33111 ||||||| | |||||| ||||||||||| ||||| |||||| | || ||| || | Sbjct 30548 TTCCTTCGATTGATATGTTTTCCATGAAGTCAAAAGGATTGTCAGAATGATACATCTAAA 30489 Query 33112 ----------ttAAATCC--------CAA-----TTCAGAAA-----TCAATC------- 33136 |||||| ||| |||| || |||| | Sbjct 30488 AGGAAAACAATTAAATAGAAGATTTGCAAACCTTTTCATAACCAAGTTCAACCAGTAGCC 30429 Query 33137 TATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAA 33196 | || |||| ||||| || || ||||| || |||||||| || || | | | Sbjct 30428 TGTCAGCGATAAATTCAATGTACTGACACATCAATTTGCAATTCATCCCAATTAAGCTGA 30369 Query 33197 CTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATC 33256 |||| || || | | | ||| || ||||| || ||||| ||| |||| || || Sbjct 30368 CTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGAACCGCCTCTCTTATTATTGACT 30309 Query 33257 TAACGGTTTCTTCACTCGGTGGATGCA--ATAA-ATGTTTAAACATCAAACATGCGAAAT 33313 ||| ||||| | || || | |||| ||||||||||| | ||| ||||||| Sbjct 30308 CAACACGTTCTT---TGGGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAAT 30252 Query 33314 CGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTA 33373 | || || || || ||||||||||| |||| ||| ||| ||| | ||||| ||||| | Sbjct 30251 CACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAA 30192 Query 33374 GGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTA 33433 | || || || |||||||| ||||| | || || |||||||| |||| ||||| | Sbjct 30191 GACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCCA 30132 Query 33434 CTGCAGCAAAGGCAA-TAAGTCTCTCTCCATAACCGGCGCTG---TCATGTATCCACTTT 33489 |||| ||||| |||| |||| | ||| || || | | ||| ||||| | | Sbjct 30131 CTGCTGCAAAAGCAACTAAGCGT-TCTGCAAAAGTAGATTTAGAATCACCAATCCAATCT 30073 Query 33490 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT-ATGGCATTAAAGAGATA 33548 ||||| | ||||| || ||||||| | ||| || ||||| || |||||| | Sbjct 30072 AATGCCCACTGAGCCTTTTTAGCAACACAAGTTAA-GTTGCTTATGGCGTTGAAGAGAAA 30014 Query 33549 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33608 || |||| ||| ||||| | || ||||| ||||| | | |||||||| || || Sbjct 30013 GTCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATCAATAAAGAGTACATTTCAGAGTG 29954 Query 33609 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 33668 ||| || || || || ||||| | || |||||||| | | |||| | |||||| ||||| Sbjct 29953 AATATTCTCGATAGCTATCTGCATCCCATAGAAACAACGAACCTCTGGAATCTGGACTTC 29894 Query 33669 TGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33728 | | || |||||| | || || || ||||||||||| || ||||| || || Sbjct 29893 TTGGCTGAAGCGTTCCAGGAGGTTCTCGAGGACAATTCCGTCACTCGCCGCAAAGAAGGC 29834 Query 33729 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33788 || || | ||| |||| ||| | | ||| | ||||| ||| ||| Sbjct 29833 TAACACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAAATC 29774 Query 33789 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTT 33848 ||| |||| ||| || |||||||| |||||||| || || | ||||| ||||| | | Sbjct 29773 TTTGGATAAATCGACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATAAAAATG 29714 Query 33849 CCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGAT 33908 ||||| || | |||| || ||||||| || || | | ||| |||||| || | Sbjct 29713 CCAGACATCGTGGTATTCTATGGGGAAAAGGACGAAACGGTGTGGGTTTGGTTTGAGTAA 29654 Query 33909 GGGTTC 33914 |||||| Sbjct 29653 GGGTTC 29648 >seq34 Length=32115376 Score = 102 bits (112), Expect = 1e-16 Identities = 144/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 63900 GGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA 63959 |||||||||||| || |||||||| ||| ||||||| || | || || | Sbjct 8067210 GGAGAATGTTTCTTGGTTCGAGGATTAATGTAGCAATATAAATCTTCAACAACATCTGAA 8067269 Query 63960 AA--TAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 64017 || ||| ||| |||||||||||||||||||| ||||| | | || || | ||||| Sbjct 8067270 AACCTAGATTTC--GTTTCCTTGTGTAGATTTGAAACGGCAAGACGAGCAGCCAAAATGG 8067327 Query 64018 CATAATCCGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 64076 |||| || |||||| |||| | || | | || | | |||||||||||| | |||||| Sbjct 8067328 CATATTCATGATGTTTTGTAAT-CATGCTTGCACATGTCTCGGCTGCCAGATTATCCAAT 8067386 Query 64077 TCTACCGTTGTTACTCCA 64094 ||||| || || |||||| Sbjct 8067387 TCTACAGTAGTCACTCCA 8067404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622940308646600