Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq862 91.5 1e-13 seq1 86.0 6e-12 >seq862 Length=148971 Score = 91.5 bits (100), Expect = 1e-13 Identities = 231/347 (67%), Gaps = 21/347 (6%) Strand=Plus/Minus Query 119766 TCTGCCACAAACTCGATGTATTCGCACATGGATTGCGAATTCATGCCCAACATAGC-GAC 119824 || || | ||| || ||||| | ||||| ||| ||||||| ||||| ||| ||| Sbjct 30426 TCAGCGATAAATTCAATGTACTGACACATCAATTTGCAATTCAT-CCCAATTAAGCTGAC 30368 Query 119825 CGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTCTACAAACAT--ACTC 119882 |||| || | || || || |||| ||| || ||||| ||| | || |||| Sbjct 30367 TGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGAACCGCCTCTCTTATTATTGACTC 30308 Query 119883 AACACCTTGGTCTTGGAGAGCTTGTTCTTTTCGGGAATATATTTATTGTAGTATAGACAA 119942 ||||| || ||| | ||| ||||| | ||||| |||| | |||||||| Sbjct 30307 AACACGTT---CTTTGGGAGG-----CTTTTTGATAATATGTTTAA---ACAATAGACAA 30259 Query 119943 GCAAAGTCGGTGTGTAGTCCTTCGTCTCTGGAAATGAGTTCGTTGCTGTAAGTCAAGCCG 120002 || || || ||||||||||||||||| || | ||| ||||| ||| || || Sbjct 30258 GCGAAATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCA 30199 Query 120003 GGTAGAGCTCCTTTTTTCGAGTCTTTGATATAGTAGATTGCAGCAAAACTACCAGaaaaa 120062 || | | ||| |||| || | || | || || ||||| |||||||||||| Sbjct 30198 GGCATAAGACCTCGTTTC------TTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAA 30145 Query 120063 aaGACGCCTTCGACGATAGCAAAAGCGACCATGCGTTCGGCGAATGT 120109 ||||| ||||| || |||||||| || | |||||| || || || Sbjct 30144 AAGACACCTTCCACTGCTGCAAAAGCAACTAAGCGTTCTGCAAAAGT 30098 >seq1 Length=65476681 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || |||||||||||||| ||| ||||||| | ||| | || | | Sbjct 54270558 ATGCAAATATTCGTGAAAACATTAACTGGTAAAACGATCACTTTGGAAGTTGAGCCGAGT 54270617 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | || || ||||| || ||||||||||| || || |||||| Sbjct 54270618 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGATAAAGAAGGGATTCCACCTGATCAA 54270677 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG 26925 ||| | || || | | || || || || ||||||| Sbjct 54270678 CAACGTCTGATCTTTGCTGGTAAGCAGCTAGAAGATG 54270714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478657104797200