Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 3e-14 seq34 87.8 5e-12 >seq1 Length=65476681 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||||||||| ||||| |||||||||||||| || |||| || || | || |||||| Sbjct 18598719 GGTCTTGGTGTACCGTTCAATATTGCAAGTTATGCTTTACTAACATGTATGATTGCTCAT 18598660 Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACA 111881 |||| | | ||||| ||||| ||| | ||| || || ||||||||| |||| || Sbjct 18598659 GTTACTGGTTTAAAACCTGGTGAGTTCGTCCACACAATTGGCGATGCGCATATTTATTCA 18598600 Query 111882 AACCA 111886 ||||| Sbjct 18598599 AACCA 18598595 Score = 87.8 bits (96), Expect = 5e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 111351 GGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCA 111410 ||||| || ||||| || | ||||||||||| ||| ||||||| | |||||| || Sbjct 18604887 GGAATCGTAGAAGAGCTATTATGGTTTATTCGTGGATCTACAAATTCTCGTGAACTGGCG 18604828 Query 111411 GCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGAT 111461 | ||| |||||| | | ||||||| ||||||||| ||||| ||| ||||| Sbjct 18604827 GAAAAGAATGTACATTTCTGGGATGCAAATGGATCTCGTGAATTTTTAGAT 18604777 >seq34 Length=32115376 Score = 87.8 bits (96), Expect = 5e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 |||||||| ||||| | || | ||||||||||| ||||| ||||| || || || || Sbjct 8064866 CAGATTGAAACAGGCAATCCATTCATGTTGTACAAGGATTCTTGCAATCGTAAATCAAAT 8064807 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 || ||||| || || ||||||| ||||| ||||| || || || |||| || | Sbjct 8064806 CACCAGCATCTAGGCACAATTCGTTGCAGCAATCTATGCACGGAAATAGTTGAGTATTCT 8064747 Query 364264 GCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGAT 364301 | || ||||| || || || ||||| | || ||||| Sbjct 8064746 TCACCAGACGAAACAGCTGTCTGTAATTTGGCTTCGAT 8064709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303338821192070