Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq862 235 7e-57 seq34 109 7e-19 >seq862 Length=148971 Score = 235 bits (260), Expect = 7e-57 Identities = 511/752 (68%), Gaps = 17/752 (2%) Strand=Plus/Minus Query 32493 CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 32552 || || |||| |||||| || || ||||| || |||||||| || || | | Sbjct 30429 CTGTCAGCGATAAATTCAATGTACTGACACATCAATTTGCAATTCATCCCAATTAAGCTG 30370 Query 32553 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAAT-AGAGACCGCGTCTGTTATAATAGA 32611 ||||| || || | | | ||| || ||||| || ||| ||||| ||| |||| || || Sbjct 30369 ACTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGA-ACCGCCTCTCTTATTATTGA 30311 Query 32612 TCTTACTGTTTCTTCACTCGGTGGATACA--ATAA-ATGTTTAAACATCAAACATGCGAA 32668 || ||||| | || || | |||| ||||||||||| | ||| ||||| Sbjct 30310 CTCAACACGTTCTT---TGGGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAA 30254 Query 32669 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 32728 ||| || ||||| || ||||||||||| |||||||| ||| ||| | ||||| ||||| Sbjct 30253 ATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCAT 30194 Query 32729 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 32788 || || || || |||||||| ||||| | ||||| |||||||| || | ||||| Sbjct 30193 AAGACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTC 30134 Query 32789 TACTGCCGCAAAGGCAA-TAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCCACT 32844 ||||| ||||| |||| |||| | ||| || || | | ||| ||||| | Sbjct 30133 CACTGCTGCAAAAGCAACTAAG-CGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAAT 30075 Query 32845 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA--TTGTCTCTATAGCATTAAAGAG 32902 | ||||| | ||||| || ||||||| | ||| || ||| || || ||||| Sbjct 30074 CTAATGCCCACTGAGCCTTTTTAGCAACACAAGTTAAGTTG-CT-TATGGCGTTGAAGAG 30017 Query 32903 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 32962 | ||| |||| ||| ||||| | |||||||||||||| | | |||||||| || Sbjct 30016 AAAGTCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATCAATAAAGAGTACATTTCAGA 29957 Query 32963 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTAC 33022 ||||| || || || || || || | || ||||| || | | |||| | |||||| || Sbjct 29956 GTGAATATTCTCGATAGCTATCTGCATCCCATAGAAACAACGAACCTCTGGAATCTGGAC 29897 Query 33023 TTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 33082 |||| | || ||||| | || || || ||||||||||| || ||||| || Sbjct 29896 TTCTTGGCTGAAGCGTTCCAGGAGGTTCTCGAGGACAATTCCGTCACTCGCCGCAAAGAA 29837 Query 33083 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGAT 33142 || || || | ||| |||| ||| | | ||| | ||||| ||| Sbjct 29836 GGCTAACACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAA 29777 Query 33143 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33202 |||||| |||| ||| || |||||||| |||||||| || || | ||||| ||||| | Sbjct 29776 ATCTTTGGATAAATCGACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATAAAA 29717 Query 33203 ATTCCAGATGTCATGATATTGAATTGGAAAAA 33234 || ||||| || || |||| || || |||| Sbjct 29716 ATGCCAGACATCGTGGTATTCTATGGGGAAAA 29685 >seq34 Length=32115376 Score = 109 bits (120), Expect = 7e-19 Identities = 179/257 (70%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 63280 AATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCA---CTGGCACGAATATT 63336 ||||||||| ||| ||||| || || | || ||| | ||| ||| ||||| || Sbjct 8065758 AATACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTG---CGAATGTT 8065814 Query 63337 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63396 | || ||| || || ||||| || | ||||| || | ||| ||| ||||| ||| Sbjct 8065815 ATGAACATTTAGTCCAATACCCCCGGCATTCTTAGATATAACTGCACATTCTTTTAGCGT 8065874 Query 63397 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 63456 ||| || ||||| ||||||||||| || |||| | | |||||||| || || | || Sbjct 8065875 ATCGTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTCGAAAGCTG 8065934 Query 63457 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGA 63516 | | ||| || || ||||| | || || ||||| || |||||||| |||||||| Sbjct 8065935 TGGTTTAGGAGTCCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCACTTTTCAGA 8065994 Query 63517 AAGTAGATTGTACGTCT 63533 | || || ||||||| Sbjct 8065995 CATTAAGTTATACGTCT 8066011 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 63754 AGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACT 63813 |||| |||||||| || |||||| | ||| ||||||| || | || || Sbjct 8067209 AGGAGAATGTTTCTTGGTTCGAGGATTAATGTAGCAATATAAATCTTCAACAACATCTGA 8067268 Query 63814 AAA--TAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 63871 ||| ||| ||| ||||| |||||||||||||| ||||| | | ||| || | |||| Sbjct 8067269 AAACCTAGATTTC--GTTTCCTTGTGTAGATTTGAAACGGCAAGACGAGCAGCCAAAATG 8067326 Query 63872 GCATAATCCGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCAA 63930 ||||| || |||||| |||| | || | | || | | |||||||||||| | ||||| Sbjct 8067327 GCATATTCATGATGTTTTGTAAT-CATGCTTGCACATGTCTCGGCTGCCAGATTATCCAA 8067385 Query 63931 TTCTACCGTTGTTACACCA 63949 |||||| || || || ||| Sbjct 8067386 TTCTACAGTAGTCACTCCA 8067404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633624990446000