Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 141 8e-29 seq14 122 8e-23 >seq1 Length=65476681 Score = 141 bits (156), Expect = 8e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||||||||| || || || || || |||||| | ||||| | ||||| ||| || Sbjct 54270555 ACGATGCAAATATTCGTGAAAACATTAACTGGTAAAACGATCACTTTGGAAGTTGAGCCG 54270614 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||| || ||| ||||| || ||| || |||||||||||||||||||| Sbjct 54270615 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAAGATAAAGAAGGGATTCCACCTGAT 54270674 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | || ||||| || || || ||||||||| |||||| || |||||| Sbjct 54270675 CAACAACGTCTGATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGCACATTGTCTGATTAC 54270734 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||||| || ||||| ||||| || || || ||| Sbjct 54270735 AATATCCAGAAAGAGTCCACTCTTCACTTGGTG 54270767 Score = 129 bits (142), Expect = 5e-25 Identities = 156/211 (74%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| |||||| | ||||| | ||||| ||| || | Sbjct 54270786 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTTGAGCCGAGT 54270845 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| || |||||||||||||||||||| ||| Sbjct 54270846 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGATAAAGAAGGGATTCCACCTGATCAA 54270905 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| || || || ||||||||| |||||| || |||| || Sbjct 54270906 CAACGTCTGATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGCACATTGTCTGATTTACAT 54270965 Query 25179 ATTCAA-AAAGAATCCACGCTACATTTAGTG 25208 || ||| ||||| ||||| || || || ||| Sbjct 54270966 ATCCAAGAAAGAGTCCACTCTTCACTTGGTG 54270996 >seq14 Length=34464480 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| ||||| ||||| ||||| | ||||| | || |||||| | Sbjct 20621855 AATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20621796 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| ||||| ||| |||| || ||| ||||||||||| ||||| |||||||| Sbjct 20621795 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20621736 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || || || || || ||||||| || ||| || || ||||| Sbjct 20621735 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20621676 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || ||||| || || || ||| | || || | ||| | || |||| Sbjct 20621675 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAA 20621626 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| ||||| ||||| ||||| | ||||| | || |||||| | Sbjct 20637863 AATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20637804 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| ||||| ||| |||| || ||| ||||||||||| ||||| |||||||| Sbjct 20637803 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20637744 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || || || || || ||||||| || ||| || || ||||| Sbjct 20637743 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20637684 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || ||||| || || || ||| | || || | ||| | || |||| Sbjct 20637683 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAA 20637634 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| ||||| ||||| ||||| | ||||| | || |||||| | Sbjct 20638091 AATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20638032 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| ||||| ||| |||| || ||| ||||||||||| ||||| |||||||| Sbjct 20638031 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20637972 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || || || || || ||||||| || ||| || || ||||| Sbjct 20637971 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20637912 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || ||||| || || || ||| | || || | ||| | || |||| Sbjct 20637911 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAA 20637862 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| ||||| ||||| ||||| | ||||| | || |||||| | Sbjct 20638319 AATGCAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20638260 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| ||||| ||| |||| || ||| ||||||||||| ||||| |||||||| Sbjct 20638259 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20638200 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || || || || || ||||||| || ||| || || ||||| Sbjct 20638199 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20638140 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || ||||| || || || ||| | || || | ||| | || |||| Sbjct 20638139 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAA 20638090 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| ||||| ||||| ||||| | ||||| | || |||||| | Sbjct 20638547 AATGCAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20638488 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| ||||| ||| |||| || ||| ||||||||||| ||||| |||||||| Sbjct 20638487 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20638428 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || || || || || ||||||| || ||| || || ||||| Sbjct 20638427 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20638368 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || ||||| || || || ||| | || || | ||| | || |||| Sbjct 20638367 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAA 20638318 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 ||| |||||| ||||| |||||||| ||||| || || | || ||| | || |||||| Sbjct 20622087 GAAGAATGCAGATATTCGTAAAGACATTGACAGGGAAGACTATAACATTGGAGGTGGAGC 20622028 Query 25054 CGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 | ||| ||||| ||| |||| || ||| ||||||||||| ||||| |||| Sbjct 20622027 CTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTG 20621968 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 ||||||| || | || || || || || || || ||||||| || ||| || || | Sbjct 20621967 ACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACT 20621908 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||| || || ||||| || || || ||| | || || | ||| | || |||| Sbjct 20621907 ACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAA 20621854 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 ||| |||||| ||||| |||||||| ||||| || || | || ||| | || |||||| Sbjct 20638779 GAAGAATGCAGATATTCGTAAAGACATTGACAGGGAAGACTATAACATTGGAGGTGGAGC 20638720 Query 25054 CGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 | ||| ||||| ||| |||| || ||| ||||||||||| ||||| |||| Sbjct 20638719 CTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTG 20638660 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 ||||||| || | || || || || || || || ||||||| || ||| || || | Sbjct 20638659 ACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACT 20638600 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||| || || ||||| || || || ||| | || || | ||| | || |||| Sbjct 20638599 ACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAA 20638546 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| ||||| ||||| ||||| | ||||| | || |||||| | Sbjct 20621627 AATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20621568 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| ||||| ||| |||| || ||| ||||||||||| ||||| |||||||| Sbjct 20621567 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20621508 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || || || || || ||||||| || ||| || || ||||| Sbjct 20621507 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20621448 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || ||||| | || || | || | ||||| Sbjct 20621447 CATCCAGAAGGAGTCAACCTTACATCTTGTTTTACGCCTGCGTGGAGG 20621400 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| ||||| ||||| ||||| | ||||| | || |||||| | Sbjct 20637635 AATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20637576 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| ||||| ||| |||| || ||| ||||||||||| ||||| |||||||| Sbjct 20637575 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20637516 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || || || || || ||||||| || ||| || || ||||| Sbjct 20637515 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20637456 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || ||||| | || || | || | ||||| Sbjct 20637455 CATCCAGAAGGAGTCAACCTTACATCTTGTTTTACGCCTGCGTGGAGG 20637408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433323326151275