Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq862 248 1e-60 >seq862 Length=148971 Score = 248 bits (274), Expect = 1e-60 Identities = 538/797 (68%), Gaps = 20/797 (3%) Strand=Plus/Minus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 || ||||| | |||||| ||||||||| ||||||| | |||||||| || | | | Sbjct 30429 CTGTCAGCGATAAATTCAATGTACTGACACATCAATTTGCAATTCATCCCAATTAAGCTG 30370 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 || ||||| || |||| || || || | || || | ||| || ||| | | ||| Sbjct 30369 ACTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGAACCGCCTCTCTTATTATTG-- 30312 Query 93044 ATTACTCTAC----TATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCAA 93098 |||| || | ||||| || |||| | | || || ||| || || || | Sbjct 30311 ---ACTCAACACGTTCTTTGGGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGA 30255 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 | || ||||| |||||||||| || || |||||||| || | | || || | Sbjct 30254 AATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCA 30195 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 || ||||||||||| ||||| ||||| | ||||| |||||||||||||| | ||||| Sbjct 30194 TAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTT 30135 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATT---TGCGGAATTACTGCTGATCC 93275 |||| |||||||| || || | ||||| |||||| | | |||| | | |||| Sbjct 30134 CCACTGCTGCAAAAGCAACTAAGCGTTCTGCAAAAGTAGATTTAGAATCA---CCAATCC 30078 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC-GATAGCGTTAAAT 93334 | | ||| ||||| | || ||||| || ||||| || ||| | || ||||| || Sbjct 30077 AATCTAATGCCCACTGAGCCTTTTTAGCAACACAAGTTA-AGTTGCTTATGGCGTTGAAG 30019 Query 93335 AGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCA 93394 || | || | || | || ||| ||||||||||| || || | ||| ||||||||| Sbjct 30018 AGAAAGTCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATCAATAAAGAGTACATTTCA 29959 Query 93395 GAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGC 93454 || || | |||||| || || || || | || |||||||| | | | || | ||||| Sbjct 29958 GAGTGAATATTCTCGATAGCTATCTGCATCCCATAGAAACAACGAACCTCTGGAATCTGG 29899 Query 93455 ACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaa 93514 |||||||| || | || | ||| || || ||| || || || || ||||| Sbjct 29898 ACTTCTTGGCTGAAGCGTTCCAGGAGGTTCTCGAGGACAATTCCGTCACTCGCCGCAAAG 29839 Query 93515 aaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGAT 93574 || || || | | ||| ||||| || || |||| | ||||||| | || Sbjct 29838 AAGGCTAACACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAAT-GTAT 29780 Query 93575 -AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 | |||||| || | |||||| ||||| ||||||||||| || ||| | || || || || Sbjct 29779 GAAATCTTTGGATAAATCGACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATA 29720 Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTT 93693 | || ||| | || || |||| || || || | ||| ||||| | ||||| ||| Sbjct 29719 AAAATGCCAGACATCGTGGTATTCTATGGGGAAAAGGACGAAACGGTGTGGGTTTGGTTT 29660 Query 93694 TAGTAACGGCTCTAGTT 93710 ||||| || ||||||| Sbjct 29659 GAGTAAGGGTTCTAGTT 29643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556854639727400