Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 138 1e-27 >seq1 Length=65476681 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| || || ||||| ||||| ||||||||| ||||| | ||||| || | | Sbjct 54270557 GATGCAAATATTCGTGAAAACATTAACTGGTAAAACGATCACTTTGGAAGTTGAGCCGAG 54270616 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || | || || || ||||| || || || |||||||| ||||| Sbjct 54270617 TGACACCATTGAGAATGTGAAGGCCAAGATCCAAGATAAAGAAGGGATTCCACCTGATCA 54270676 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||||||||| || ||||| || || ||| |||| ||| ||||| | || |||||||| Sbjct 54270677 ACAACGTCTGATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGCACATTGTCTGATTACAA 54270736 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| ||||| | || || || ||||| | || || ||| Sbjct 54270737 TATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCGTGGTGGT 54270785 Score = 116 bits (128), Expect = 3e-21 Identities = 164/229 (72%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || || || ||||||||| ||||| | ||||| || | | Sbjct 54270786 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTTGAGCCGAGT 54270845 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || ||||| || || || |||||||| |||||| Sbjct 54270846 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGATAAAGAAGGGATTCCACCTGATCAA 54270905 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || || ||| |||| ||| ||||| | || |||| | Sbjct 54270906 CAACGTCTGATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGCACATTGTCTGATTTACAT 54270965 Query 22399 ATTCAA-AAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||| ||||| ||||| | || || || ||||| | || || ||| Sbjct 54270966 ATCCAAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCGTGGTGGT 54271014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419723472840025