Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq14 109 5e-19 seq1 102 7e-17 seq789 86.0 5e-12 >seq14 Length=34464480 Score = 109 bits (120), Expect = 5e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 114150 CAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAA 114209 || || || ||||| || | ||||| | ||||| || || || || || |||||||| Sbjct 20621394 CATATGCCTCCACGCAGGCGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAG 20621453 Query 114210 TCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCC 114269 || || |||||| |||||| | || ||||||||| |||| | ||| |||||||| Sbjct 20621454 TCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCA 20621513 Query 114270 GGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGAT 114329 |||||||| ||||||||||| ||||| ||| | | |||| || || | | Sbjct 20621514 GGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGC 20621573 Query 114330 TCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || |||| || | ||| || || |||| || || ||||| || ||||| Sbjct 20621574 TCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20621626 Score = 109 bits (120), Expect = 5e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 114150 CAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAA 114209 || || || ||||| || | ||||| | ||||| || || || || || |||||||| Sbjct 20637402 CATATGCCTCCACGCAGGCGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAG 20637461 Query 114210 TCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCC 114269 || || |||||| |||||| | || ||||||||| |||| | ||| |||||||| Sbjct 20637462 TCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCA 20637521 Query 114270 GGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGAT 114329 |||||||| ||||||||||| ||||| ||| | | |||| || || | | Sbjct 20637522 GGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGC 20637581 Query 114330 TCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || |||| || | ||| || || |||| || || ||||| || ||||| Sbjct 20637582 TCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20637634 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || | ||| | || || ||||| || |||||||| || Sbjct 20621625 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCA 20621684 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| | || ||||||||| |||| | ||| |||||||| ||| Sbjct 20621685 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGA 20621744 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||||| ||| | | |||| || || | | || Sbjct 20621745 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCC 20621804 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||| || || |||| || || ||||| || ||||| Sbjct 20621805 ACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20621854 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || | ||| | || || ||||| || |||||||| || Sbjct 20621853 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCA 20621912 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| | || ||||||||| |||| | ||| |||||||| ||| Sbjct 20621913 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGA 20621972 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||||| ||| | | |||| || || | | || Sbjct 20621973 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCC 20622032 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || |||| || ||||| || |||||||| Sbjct 20622033 ACCTCCAATGTTATAGTCTTCCCTGTCAATGTCTTTACGAATATCTGCAT 20622082 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || | ||| | || || ||||| || |||||||| || Sbjct 20637633 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCA 20637692 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| | || ||||||||| |||| | ||| |||||||| ||| Sbjct 20637693 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGA 20637752 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||||| ||| | | |||| || || | | || Sbjct 20637753 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCC 20637812 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||| || || |||| || || ||||| || ||||| Sbjct 20637813 ACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20637862 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || | ||| | || || ||||| || |||||||| || Sbjct 20637861 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCA 20637920 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| | || ||||||||| |||| | ||| |||||||| ||| Sbjct 20637921 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGA 20637980 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||||| ||| | | |||| || || | | || Sbjct 20637981 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCC 20638040 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||| || || |||| || || ||||| || ||||| Sbjct 20638041 ACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20638090 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || | ||| | || || ||||| || |||||||| || Sbjct 20638089 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCA 20638148 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| | || ||||||||| |||| | ||| |||||||| ||| Sbjct 20638149 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGA 20638208 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||||| ||| | | |||| || || | | || Sbjct 20638209 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCC 20638268 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||| || || |||| || || ||||| || ||||| Sbjct 20638269 ACCTCCAACGTGATCGTCTTACCAGTCAATGTCTTCACAAATATTTGCAT 20638318 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || | ||| | || || ||||| || |||||||| || Sbjct 20638317 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCA 20638376 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| | || ||||||||| |||| | ||| |||||||| ||| Sbjct 20638377 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGA 20638436 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||||| ||| | | |||| || || | | || Sbjct 20638437 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCC 20638496 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||| || || |||| || || ||||| || ||||| Sbjct 20638497 ACCTCCAACGTGATCGTCTTACCAGTCAATGTCTTCACAAATATTTGCAT 20638546 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || | ||| | || || ||||| || |||||||| || Sbjct 20638545 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCA 20638604 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| | || ||||||||| |||| | ||| |||||||| ||| Sbjct 20638605 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGA 20638664 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||||| ||| | | |||| || || | | || Sbjct 20638665 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCC 20638724 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || |||| || ||||| || |||||||| Sbjct 20638725 ACCTCCAATGTTATAGTCTTCCCTGTCAATGTCTTTACGAATATCTGCAT 20638774 >seq1 Length=65476681 Score = 102 bits (112), Expect = 7e-17 Identities = 162/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTT-TTGAATGTTGTAATC 114211 ||||| ||||| || | ||| || || || | || || ||||| ||| || | |||| Sbjct 54271016 ATACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTTGGATATGTAAATC 54270957 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 || || ||| |||||| || || |||||||| |||| ||||| ||||| || || Sbjct 54270956 AGACAATGTGCGACCATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGG 54270897 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||| |||||||| || ||||| || | | |||| |||||| | | || Sbjct 54270896 TGGAATCCCTTCTTTATCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTCGGCTC 54270837 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | |||||| || |||| || || |||||||||||||| Sbjct 54270836 AACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 54270786 >seq789 Length=29961 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || ||||| || || || ||||| ||| Sbjct 592 ATACCACCACGAAGACGAAGGACAAGATGGAGTGTTGATTCCTTCTGTATATTGTAGTCG 651 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| |||||||| ||||| | || | ||| |||||||| || Sbjct 652 GAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGGTCTGGT 711 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTG-TTCAACGGTGTCGGTGGATTC 114331 || ||||||||||| || || ||| | ||| ||| ||| | || || | | || Sbjct 712 GGGATGCCTTCTTTATCTTGGAT-TTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTC 770 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || || || || || ||||||||||| Sbjct 771 AACTTCTAGAGTTATAGTTTTTCCAGTAAGTGTCTTCACGAAAATCTGCAT 821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420129868456620