Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq34 102 6e-17 seq20 89.7 4e-13 seq39 84.2 2e-11 >seq34 Length=32115376 Score = 102 bits (112), Expect = 6e-17 Identities = 88/104 (85%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 114321 AGGCATGCAATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA 114378 ||| || ||||| |||||||| ||||||||||||| || |||||||| ||| | | || Sbjct 27394643 AGGGATTCAATG-CATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAGC-GTTTAC 27394700 Query 114379 GATCTAAGGAACCAAAACTGATATATTGAGCCATTCGTGGTATC 114422 |||||||||||||| | ||||| || |||||||||||||||||| Sbjct 27394701 GATCTAAGGAACCATAGCTGATTTAATGAGCCATTCGTGGTATC 27394744 Score = 102 bits (112), Expect = 6e-17 Identities = 88/104 (85%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 115518 AGGCATGCAATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA 115575 ||| || ||||| |||||||| ||||||||||||| || |||||||| ||| | | || Sbjct 27394643 AGGGATTCAATG-CATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAGC-GTTTAC 27394700 Query 115576 GATCTAAGGAACCAAAACTGATATATTGAGCCATTCGTGGTATC 115619 |||||||||||||| | ||||| || |||||||||||||||||| Sbjct 27394701 GATCTAAGGAACCATAGCTGATTTAATGAGCCATTCGTGGTATC 27394744 >seq20 Length=54538 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/120 (80%), Gaps = 8/120 (7%) Strand=Plus/Minus Query 115518 AGGCATGCAATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA 115575 ||| || ||| | |||||||| ||||||||||||| || |||||||| ||| | | || Sbjct 1380 AGGGATTCAAGG-CATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAGC-GTTTAC 1323 Query 115576 GATCTAAGGAACCAAAACTGATATATTGAGCCATTCGTGGT---ATCGTCTTAA-GTATG 115631 |||||||||||||| | ||||| || ||||||||||| ||| | ||| |||| ||||| Sbjct 1322 GATCTAAGGAACCATAGCTGATTTAATGAGCCATTCGCGGTTTCACCGTTTTAAGGTATG 1263 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/120 (80%), Gaps = 8/120 (7%) Strand=Plus/Minus Query 114321 AGGCATGCAATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA 114378 ||| || ||| | |||||||| ||||||||||||| || |||||||| ||| | | || Sbjct 1380 AGGGATTCAAGG-CATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAGC-GTTTAC 1323 Query 114379 GATCTAAGGAACCAAAACTGATATATTGAGCCATTCGTGGT---ATCGTCTTAA-GTATG 114434 |||||||||||||| | ||||| || ||||||||||| ||| | ||| |||| ||||| Sbjct 1322 GATCTAAGGAACCATAGCTGATTTAATGAGCCATTCGCGGTTTCACCGTTTTAAGGTATG 1263 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/120 (80%), Gaps = 8/120 (7%) Strand=Plus/Minus Query 115518 AGGCATGCAATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA 115575 ||| || ||| | |||||||| ||||||||||||| || |||||||| ||| | | || Sbjct 11021 AGGGATTCAAGG-CATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAGC-GTTTAC 10964 Query 115576 GATCTAAGGAACCAAAACTGATATATTGAGCCATTCGTGGT---ATCGTCTTAA-GTATG 115631 |||||||||||||| | ||||| || ||||||||||| ||| | ||| |||| ||||| Sbjct 10963 GATCTAAGGAACCATAGCTGATTTAATGAGCCATTCGCGGTTTCACCGTTTTAAGGTATG 10904 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/120 (80%), Gaps = 8/120 (7%) Strand=Plus/Minus Query 114321 AGGCATGCAATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA 114378 ||| || ||| | |||||||| ||||||||||||| || |||||||| ||| | | || Sbjct 11021 AGGGATTCAAGG-CATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAGC-GTTTAC 10964 Query 114379 GATCTAAGGAACCAAAACTGATATATTGAGCCATTCGTGGT---ATCGTCTTAA-GTATG 114434 |||||||||||||| | ||||| || ||||||||||| ||| | ||| |||| ||||| Sbjct 10963 GATCTAAGGAACCATAGCTGATTTAATGAGCCATTCGCGGTTTCACCGTTTTAAGGTATG 10904 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/120 (80%), Gaps = 8/120 (7%) Strand=Plus/Minus Query 115518 AGGCATGCAATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA 115575 ||| || ||| | |||||||| ||||||||||||| || |||||||| ||| | | || Sbjct 26855 AGGGATTCAAGG-CATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAGC-GTTTAC 26798 Query 115576 GATCTAAGGAACCAAAACTGATATATTGAGCCATTCGTGGT---ATCGTCTTAA-GTATG 115631 |||||||||||||| | ||||| || ||||||||||| ||| | ||| |||| ||||| Sbjct 26797 GATCTAAGGAACCATAGCTGATTTAATGAGCCATTCGCGGTTTCACCGTTTTAAGGTATG 26738 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/120 (80%), Gaps = 8/120 (7%) Strand=Plus/Minus Query 114321 AGGCATGCAATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA 114378 ||| || ||| | |||||||| ||||||||||||| || |||||||| ||| | | || Sbjct 26855 AGGGATTCAAGG-CATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAGC-GTTTAC 26798 Query 114379 GATCTAAGGAACCAAAACTGATATATTGAGCCATTCGTGGT---ATCGTCTTAA-GTATG 114434 |||||||||||||| | ||||| || ||||||||||| ||| | ||| |||| ||||| Sbjct 26797 GATCTAAGGAACCATAGCTGATTTAATGAGCCATTCGCGGTTTCACCGTTTTAAGGTATG 26738 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/120 (80%), Gaps = 8/120 (7%) Strand=Plus/Minus Query 115518 AGGCATGCAATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA 115575 ||| || ||| | |||||||| ||||||||||||| || |||||||| ||| | | || Sbjct 36448 AGGGATTCAAGG-CATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAGC-GTTTAC 36391 Query 115576 GATCTAAGGAACCAAAACTGATATATTGAGCCATTCGTGGT---ATCGTCTTAA-GTATG 115631 |||||||||||||| | ||||| || ||||||||||| ||| | ||| |||| ||||| Sbjct 36390 GATCTAAGGAACCATAGCTGATTTAATGAGCCATTCGCGGTTTCACCGTTTTAAGGTATG 36331 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/120 (80%), Gaps = 8/120 (7%) Strand=Plus/Minus Query 114321 AGGCATGCAATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA 114378 ||| || ||| | |||||||| ||||||||||||| || |||||||| ||| | | || Sbjct 36448 AGGGATTCAAGG-CATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAGC-GTTTAC 36391 Query 114379 GATCTAAGGAACCAAAACTGATATATTGAGCCATTCGTGGT---ATCGTCTTAA-GTATG 114434 |||||||||||||| | ||||| || ||||||||||| ||| | ||| |||| ||||| Sbjct 36390 GATCTAAGGAACCATAGCTGATTTAATGAGCCATTCGCGGTTTCACCGTTTTAAGGTATG 36331 >seq39 Length=20039393 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/120 (79%), Gaps = 8/120 (7%) Strand=Plus/Minus Query 115518 AGGCATGCAATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA 115575 ||| || ||| | |||||||| ||||||||||||| || |||||||| ||| | | || Sbjct 11129352 AGGAATTCAAGG-CATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAGC-GTTTAT 11129295 Query 115576 GATCTAAGGAACCAAAACTGATATATTGAGCCATTCGTGGT---ATCGTCTTAA-GTATG 115631 |||||||||||||| | ||||| || |||||||||| ||| | ||| |||| ||||| Sbjct 11129294 GATCTAAGGAACCATAGCTGATTTAATGAGCCATTCACGGTTTCACCGTTTTAAGGTATG 11129235 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/120 (79%), Gaps = 8/120 (7%) Strand=Plus/Minus Query 114321 AGGCATGCAATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA 114378 ||| || ||| | |||||||| ||||||||||||| || |||||||| ||| | | || Sbjct 11129352 AGGAATTCAAGG-CATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAGC-GTTTAT 11129295 Query 114379 GATCTAAGGAACCAAAACTGATATATTGAGCCATTCGTGGT---ATCGTCTTAA-GTATG 114434 |||||||||||||| | ||||| || |||||||||| ||| | ||| |||| ||||| Sbjct 11129294 GATCTAAGGAACCATAGCTGATTTAATGAGCCATTCACGGTTTCACCGTTTTAAGGTATG 11129235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397058117309770