Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq14 147 5e-30 seq789 125 2e-23 seq1 123 6e-23 >seq14 Length=34464480 Score = 147 bits (162), Expect = 5e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| || ||||| | || ||||| ||||| || ||||| | Sbjct 20621627 TCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGA 20621686 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || ||||| ||||| || || || || |||||||||| ||| ||||| | || Sbjct 20621687 CAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGG 20621746 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || |||||||| || ||||| ||||||||||| || || |||| ||| || | || || Sbjct 20621747 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCAC 20621806 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | |||||||||||| || |||| ||||| || ||||| |||||| Sbjct 20621807 CTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20621855 Score = 147 bits (162), Expect = 5e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| || ||||| | || ||||| ||||| || ||||| | Sbjct 20621855 TCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGA 20621914 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || ||||| ||||| || || || || |||||||||| ||| ||||| | || Sbjct 20621915 CAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGG 20621974 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || |||||||| || ||||| ||||||||||| || || |||| ||| || | || || Sbjct 20621975 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCAC 20622034 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | || || |||||||| |||| ||||| ||||||||||||||| Sbjct 20622035 CTCCAATGTTATAGTCTTCCCTGTCAATGTCTTTACGAATATCTGCATT 20622083 Score = 147 bits (162), Expect = 5e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| || ||||| | || ||||| ||||| || ||||| | Sbjct 20637635 TCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGA 20637694 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || ||||| ||||| || || || || |||||||||| ||| ||||| | || Sbjct 20637695 CAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGG 20637754 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || |||||||| || ||||| ||||||||||| || || |||| ||| || | || || Sbjct 20637755 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCAC 20637814 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | |||||||||||| || |||| ||||| || ||||| |||||| Sbjct 20637815 CTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20637863 Score = 147 bits (162), Expect = 5e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| || ||||| | || ||||| ||||| || ||||| | Sbjct 20637863 TCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGA 20637922 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || ||||| ||||| || || || || |||||||||| ||| ||||| | || Sbjct 20637923 CAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGG 20637982 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || |||||||| || ||||| ||||||||||| || || |||| ||| || | || || Sbjct 20637983 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCAC 20638042 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | |||||||||||| || |||| ||||| || ||||| |||||| Sbjct 20638043 CTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20638091 Score = 147 bits (162), Expect = 5e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| || ||||| | || ||||| ||||| || ||||| | Sbjct 20638091 TCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGA 20638150 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || ||||| ||||| || || || || |||||||||| ||| ||||| | || Sbjct 20638151 CAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGG 20638210 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || |||||||| || ||||| ||||||||||| || || |||| ||| || | || || Sbjct 20638211 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCAC 20638270 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | |||||||||||| || |||| ||||| || ||||| |||||| Sbjct 20638271 CTCCAACGTGATCGTCTTACCAGTCAATGTCTTCACAAATATTTGCATT 20638319 Score = 147 bits (162), Expect = 5e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| || ||||| | || ||||| ||||| || ||||| | Sbjct 20638319 TCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGA 20638378 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || ||||| ||||| || || || || |||||||||| ||| ||||| | || Sbjct 20638379 CAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGG 20638438 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || |||||||| || ||||| ||||||||||| || || |||| ||| || | || || Sbjct 20638439 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCAC 20638498 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | |||||||||||| || |||| ||||| || ||||| |||||| Sbjct 20638499 CTCCAACGTGATCGTCTTACCAGTCAATGTCTTCACAAATATTTGCATT 20638547 Score = 147 bits (162), Expect = 5e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| || ||||| | || ||||| ||||| || ||||| | Sbjct 20638547 TCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGA 20638606 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || ||||| ||||| || || || || |||||||||| ||| ||||| | || Sbjct 20638607 CAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGG 20638666 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || |||||||| || ||||| ||||||||||| || || |||| ||| || | || || Sbjct 20638667 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCAC 20638726 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | || || |||||||| |||| ||||| ||||||||||||||| Sbjct 20638727 CTCCAATGTTATAGTCTTCCCTGTCAATGTCTTTACGAATATCTGCATT 20638775 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || || ||||| ||||| || || || || |||||| Sbjct 20621436 TCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAG 20621495 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| ||||| | || || |||||||| || ||||| ||||||||||| || Sbjct 20621496 ATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTC 20621555 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| || | || || || | |||||||||||| || |||| ||||| || Sbjct 20621556 TCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACA 20621615 Query 288463 AATATCTGCATT 288474 ||||| |||||| Sbjct 20621616 AATATTTGCATT 20621627 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || || ||||| ||||| || || || || |||||| Sbjct 20637444 TCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAG 20637503 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| ||||| | || || |||||||| || ||||| ||||||||||| || Sbjct 20637504 ATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTC 20637563 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| || | || || || | |||||||||||| || |||| ||||| || Sbjct 20637564 TCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACA 20637623 Query 288463 AATATCTGCATT 288474 ||||| |||||| Sbjct 20637624 AATATTTGCATT 20637635 >seq789 Length=29961 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || ||||| | || ||| || || ||||| ||||||| Sbjct 595 CCACCACGAAGACGAAGGACAAGATGGAGTGTTGATTCCTTCTGTATATTGTAGTCGGAA 654 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| | |||||| || || || || | ||| ||||| |||| Sbjct 655 AGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGGTCTGGTGGG 714 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||| ||||||||||| || || |||||| | ||| | || ||| Sbjct 715 ATGCCTTCTTTATCTTGGATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACT 774 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || || || ||||| ||||| |||||||| Sbjct 775 TCTAGAGTTATAGTTTTTCCAGTAAGTGTCTTCACGAAAATCTGCAT 821 >seq1 Length=65476681 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||| || || | | ||||| || ||||||| || || || || ||| Sbjct 54270748 TCTTTCTGGATATTGTAATCAGACAATGTGCGACCATCTTCTAGCTGCTTACCAGCAAAG 54270689 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||||||| |||||| | ||| || ||||||||||| ||||| || || ||||| || Sbjct 54270688 ATCAGACGTTGTTGATCAGGTGGAATCCCTTCTTTATCTTGGATCTTGGCCTTCACATTC 54270629 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || |||| || ||||| | |||||||| || || || | || || ||| Sbjct 54270628 TCAATGGTGTCACTCGGCTCAACTTCCAAAGTGATCGTTTTACCAGTTAATGTTTTCACG 54270569 Query 288463 AATATCTGCAT 288473 ||||| ||||| Sbjct 54270568 AATATTTGCAT 54270558 Score = 118 bits (130), Expect = 3e-21 Identities = 142/192 (74%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 288283 TCTTT-TTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||| |||||||| | || | | ||||| || ||||||| || || || || || Sbjct 54270977 TCTTTCTTGGATATGTAAATCAGACAATGTGCGACCATCTTCTAGCTGCTTACCAGCAAA 54270918 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||||||| |||||| | ||| || ||||||||||| ||||| || || ||||| || Sbjct 54270917 GATCAGACGTTGTTGATCAGGTGGAATCCCTTCTTTATCTTGGATCTTGGCCTTCACATT 54270858 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || |||| || ||||| | |||||||| || || |||| ||||| || Sbjct 54270857 CTCAATGGTGTCACTCGGCTCAACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCAC 54270798 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 54270797 AAAAATCTGCAT 54270786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179641023825030