Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 5e-14 seq14 87.8 2e-12 seq6 86.0 7e-12 >seq1 Length=65476681 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||| || | ||| ||| || || ||||||||||||| || || || | Sbjct 54270773 ACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTGCGACC 54270714 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || ||||||||||||||||| || || || || || || || | ||| | | || || Sbjct 54270713 ATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGGAATCCCTTCTTT 54270654 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 || ||| || || | || | | ||||| |||| || || || | ||||| Sbjct 54270653 ATCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTCGGCTCAACTTCCAAAGTGAT 54270594 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || |||| || || || || |||||||| Sbjct 54270593 CGTTTTACCAGTTAATGTTTTCACGAATATTTGCAT 54270558 >seq14 Length=34464480 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 || || || | ||| || || |||||| || || ||||| |||| |||||| || | Sbjct 20621412 CGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA 20621471 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || | ||||||||||||||| || | || || ||||| | || | | || ||| Sbjct 20621472 TCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTG 20621531 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 || ||| || ||| | || | | || || || | ||||| || | |||||| Sbjct 20621532 TCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATC 20621591 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || || || | |||||| ||||| ||||||||| Sbjct 20621592 GTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20621627 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 || || || | ||| || || |||||| || || ||||| |||| |||||| || | Sbjct 20637420 CGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA 20637479 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || | ||||||||||||||| || | || || ||||| | || | | || ||| Sbjct 20637480 TCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTG 20637539 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 || ||| || ||| | || | | || || || | ||||| || | |||||| Sbjct 20637540 TCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATC 20637599 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || || || | |||||| ||||| ||||||||| Sbjct 20637600 GTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20637635 Score = 82.4 bits (90), Expect = 8e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||| |||| |||||| || | || || | ||||||||||||||| Sbjct 20621663 CTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 20621722 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | || || ||||| | || | | || ||||| ||| || ||| | | Sbjct 20621723 GATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATT 20621782 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || || || | ||||| || | |||||| || || || || | |||||| || Sbjct 20621783 CTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCAC 20621842 Query 42197 AAAGATTTGCATT 42209 ||| ||||||||| Sbjct 20621843 AAATATTTGCATT 20621855 Score = 82.4 bits (90), Expect = 8e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||| |||| |||||| || | || || | ||||||||||||||| Sbjct 20637671 CTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 20637730 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | || || ||||| | || | | || ||||| ||| || ||| | | Sbjct 20637731 GATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATT 20637790 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || || || | ||||| || | |||||| || || || || | |||||| || Sbjct 20637791 CTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCAC 20637850 Query 42197 AAAGATTTGCATT 42209 ||| ||||||||| Sbjct 20637851 AAATATTTGCATT 20637863 Score = 82.4 bits (90), Expect = 8e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||| |||| |||||| || | || || | ||||||||||||||| Sbjct 20637899 CTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 20637958 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | || || ||||| | || | | || ||||| ||| || ||| | | Sbjct 20637959 GATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATT 20638018 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || || || | ||||| || | |||||| || || || || | |||||| || Sbjct 20638019 CTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCAC 20638078 Query 42197 AAAGATTTGCATT 42209 ||| ||||||||| Sbjct 20638079 AAATATTTGCATT 20638091 >seq6 Length=1395986 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 ||||||| | | |||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 328043 CTCCTCGACCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 328102 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 328103 TACTATCGAGGA 328114 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 ||||||| | | |||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 333627 CTCCTCGACCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 333686 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 333687 TACTATCGAGGA 333698 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 ||||||| | | |||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 337357 CTCCTCGACCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 337416 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 337417 TACTATCGAGGA 337428 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 ||||||| | | |||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 345925 CTCCTCGACCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 345984 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 345985 TACTATCGAGGA 345996 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 ||||||| | | |||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 348745 CTCCTCGACCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 348804 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 348805 TACTATCGAGGA 348816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543206790708400