Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq14 123 2e-23 seq789 87.8 2e-12 seq1 82.4 8e-11 >seq14 Length=34464480 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| || ||||| | ||||| | |||||||||| || ||||||||||| Sbjct 20621399 GCCTCCACGCAGGCGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGA 20621458 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || |||||| || || | || ||||| | |||| | ||| |||||||| ||||| Sbjct 20621459 CAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGG 20621518 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||||||||| ||| || ||| | | || | || || | | |||||| Sbjct 20621519 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCAC 20621578 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | ||| | ||| |||||||||| || || ||||| || ||||| Sbjct 20621579 CTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20621626 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| || ||||| | ||||| | |||||||||| || ||||||||||| Sbjct 20637407 GCCTCCACGCAGGCGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGA 20637466 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || |||||| || || | || ||||| | |||| | ||| |||||||| ||||| Sbjct 20637467 CAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGG 20637526 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||||||||| ||| || ||| | | || | || || | | |||||| Sbjct 20637527 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCAC 20637586 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | ||| | ||| |||||||||| || || ||||| || ||||| Sbjct 20637587 CTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20637634 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| || |||||| || || | || ||||| | Sbjct 20621661 GACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCG 20621720 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||| |||||||| ||||| |||||||||||||| ||| || ||| | Sbjct 20621721 AAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACA 20621780 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | | ||||||||| | ||| | ||| |||||||||| || || Sbjct 20621781 TTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTC 20621840 Query 138601 ACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 20621841 ACAAATATTTGCAT 20621854 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| || |||||| || || | || ||||| | Sbjct 20637669 GACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCG 20637728 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||| |||||||| ||||| |||||||||||||| ||| || ||| | Sbjct 20637729 AAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACA 20637788 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | | ||||||||| | ||| | ||| |||||||||| || || Sbjct 20637789 TTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTC 20637848 Query 138601 ACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 20637849 ACAAATATTTGCAT 20637862 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| || |||||| || || | || ||||| | Sbjct 20637897 GACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCG 20637956 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||| |||||||| ||||| |||||||||||||| ||| || ||| | Sbjct 20637957 AAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACA 20638016 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | | ||||||||| | ||| | ||| |||||||||| || || Sbjct 20638017 TTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTC 20638076 Query 138601 ACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 20638077 ACAAATATTTGCAT 20638090 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| || |||||| || || | || ||||| | Sbjct 20638125 GACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCG 20638184 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||| |||||||| ||||| |||||||||||||| ||| || ||| | Sbjct 20638185 AAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACA 20638244 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | | ||||||||| | ||| | ||| |||||||||| || || Sbjct 20638245 TTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAATGTCTTC 20638304 Query 138601 ACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 20638305 ACAAATATTTGCAT 20638318 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| || |||||| || || | || ||||| | Sbjct 20638353 GACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCG 20638412 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||| |||||||| ||||| |||||||||||||| ||| || ||| | Sbjct 20638413 AAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACA 20638472 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | | ||||||||| | ||| | ||| |||||||||| || || Sbjct 20638473 TTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAATGTCTTC 20638532 Query 138601 ACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 20638533 ACAAATATTTGCAT 20638546 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| || |||||| || || | || ||||| | Sbjct 20621889 GACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCG 20621948 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||| |||||||| ||||| |||||||||||||| ||| || ||| | Sbjct 20621949 AAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACA 20622008 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | | ||||||||| | || | || || || |||| || ||| Sbjct 20622009 TTCTCAATAGTATCACTAGGCTCCACCTCCAATGTTATAGTCTTCCCTGTCAATGTCTTT 20622068 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 20622069 ACGAATATCTGCAT 20622082 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| || |||||| || || | || ||||| | Sbjct 20638581 GACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCG 20638640 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||| |||||||| ||||| |||||||||||||| ||| || ||| | Sbjct 20638641 AAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACA 20638700 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | | ||||||||| | || | || || || |||| || ||| Sbjct 20638701 TTCTCAATAGTATCACTAGGCTCCACCTCCAATGTTATAGTCTTCCCTGTCAATGTCTTT 20638760 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 20638761 ACGAATATCTGCAT 20638774 >seq789 Length=29961 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| ||||| || || ||||||||| | ||| || || || |||||||| || | Sbjct 626 TTGATTCCTTCTGTATATTGTAGTCGGAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAG 685 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | | |||| ||| |||||||| || || || |||||||| || |||||| | ||| Sbjct 686 CAAAAATTAAACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGGATTTTC-GCCTTA 744 Query 138539 ATTG-TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | || ||| | || || | | ||| || || | || | ||||| ||||| || || Sbjct 745 ACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGAGTTATAGTTTTTCCAGTAAGTGTC 804 Query 138598 TTTACAAAAATCTGCAT 138614 || || ||||||||||| Sbjct 805 TTCACGAAAATCTGCAT 821 >seq1 Length=65476681 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || || || ||||| | | |||| ||||| ||||| || || || || |||||||| Sbjct 54270940 TCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGGAATCCCTTCTTTA 54270881 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||| || || | | || | |||||| ||| ||| || || | || | | Sbjct 54270880 TCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTCGGCTCAACTTCCAAAGTGATC 54270821 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||||||||| || || |||||||||||||| Sbjct 54270820 GTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 54270786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496256910097200