Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq14 152 1e-31 seq1 107 5e-18 >seq14 Length=34464480 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || ||||||||||| || |||| ||||||||||| || ||| | ||||||| Sbjct 20621643 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 20621702 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || |||||||| | ||| || ||||| ||| ||| |||||| || Sbjct 20621703 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 20621762 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||| || | || || | | || || ||||||||||||||| Sbjct 20621763 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTC 20621822 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || |||||||| ||||| Sbjct 20621823 TTACCAGTCAACGTCTTCACAAATATTTG 20621851 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || ||||||||||| || |||| ||||||||||| || ||| | ||||||| Sbjct 20637651 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 20637710 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || |||||||| | ||| || ||||| ||| ||| |||||| || Sbjct 20637711 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 20637770 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||| || | || || | | || || ||||||||||||||| Sbjct 20637771 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTC 20637830 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || |||||||| ||||| Sbjct 20637831 TTACCAGTCAACGTCTTCACAAATATTTG 20637859 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || ||||||||||| || |||| ||||||||||| || ||| | ||||||| Sbjct 20637879 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 20637938 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || |||||||| | ||| || ||||| ||| ||| |||||| || Sbjct 20637939 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 20637998 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||| || | || || | | || || ||||||||||||||| Sbjct 20637999 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTC 20638058 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || |||||||| ||||| Sbjct 20638059 TTACCAGTCAACGTCTTCACAAATATTTG 20638087 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || ||||||||||| || |||| ||||||||||| || ||| | ||||||| Sbjct 20638107 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 20638166 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || |||||||| | ||| || ||||| ||| ||| |||||| || Sbjct 20638167 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 20638226 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||| || | || || | | || || ||||||||||||||| Sbjct 20638227 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTC 20638286 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || |||||||| ||||| Sbjct 20638287 TTACCAGTCAATGTCTTCACAAATATTTG 20638315 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || ||||||||||| || |||| ||||||||||| || ||| | ||||||| Sbjct 20638335 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 20638394 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || |||||||| | ||| || ||||| ||| ||| |||||| || Sbjct 20638395 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 20638454 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||| || | || || | | || || ||||||||||||||| Sbjct 20638455 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTC 20638514 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || |||||||| ||||| Sbjct 20638515 TTACCAGTCAATGTCTTCACAAATATTTG 20638543 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 ||||| || | || |||||||| |||| ||||||||||| || ||| | |||||||||| Sbjct 20621418 ACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 20621477 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | |||||| || |||||||| | ||| || ||||| ||| ||| |||||| || || Sbjct 20621478 AACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGG 20621537 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| ||||| || | || || | | || || |||||||||||||||||| Sbjct 20621538 ATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTA 20621597 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || | || |||||||| ||||| Sbjct 20621598 CCAGTCAACGTCTTCACAAATATTTG 20621623 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 ||||| || | || |||||||| |||| ||||||||||| || ||| | |||||||||| Sbjct 20637426 ACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 20637485 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | |||||| || |||||||| | ||| || ||||| ||| ||| |||||| || || Sbjct 20637486 AACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGG 20637545 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| ||||| || | || || | | || || |||||||||||||||||| Sbjct 20637546 ATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTA 20637605 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || | || |||||||| ||||| Sbjct 20637606 CCAGTCAACGTCTTCACAAATATTTG 20637631 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || ||||||||||| || |||| ||||||||||| || ||| | ||||||| Sbjct 20621871 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 20621930 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || |||||||| | ||| || ||||| ||| ||| |||||| || Sbjct 20621931 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 20621990 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||| || | || || | | || || ||||| || || ||| Sbjct 20621991 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAATGTTATAGTC 20622050 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 20622051 TTCCCTGTCAATGTCTTTACGAATATCTG 20622079 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || ||||||||||| || |||| ||||||||||| || ||| | ||||||| Sbjct 20638563 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 20638622 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || |||||||| | ||| || ||||| ||| ||| |||||| || Sbjct 20638623 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 20638682 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||| || | || || | | || || ||||| || || ||| Sbjct 20638683 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAATGTTATAGTC 20638742 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 20638743 TTCCCTGTCAATGTCTTTACGAATATCTG 20638771 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || |||||||||||||||||| | ||| || | || |||||| |||||||| Sbjct 20621725 ATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAA 20621666 Query 200998 GAGTCTACTCTTCACCTTGT 201017 ||||| ||||| || ||||| Sbjct 20621665 GAGTCGACTCTGCATCTTGT 20621646 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || |||||||||||||||||| | ||| || | || |||||| |||||||| Sbjct 20621953 ATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAA 20621894 Query 200998 GAGTCTACTCTTCACCTTGT 201017 ||||| ||||| || ||||| Sbjct 20621893 GAGTCGACTCTGCATCTTGT 20621874 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || |||||||||||||||||| | ||| || | || |||||| |||||||| Sbjct 20637733 ATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAA 20637674 Query 200998 GAGTCTACTCTTCACCTTGT 201017 ||||| ||||| || ||||| Sbjct 20637673 GAGTCGACTCTGCATCTTGT 20637654 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || |||||||||||||||||| | ||| || | || |||||| |||||||| Sbjct 20637961 ATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAA 20637902 Query 200998 GAGTCTACTCTTCACCTTGT 201017 ||||| ||||| || ||||| Sbjct 20637901 GAGTCGACTCTGCATCTTGT 20637882 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || |||||||||||||||||| | ||| || | || |||||| |||||||| Sbjct 20638189 ATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAA 20638130 Query 200998 GAGTCTACTCTTCACCTTGT 201017 ||||| ||||| || ||||| Sbjct 20638129 GAGTCGACTCTGCATCTTGT 20638110 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || |||||||||||||||||| | ||| || | || |||||| |||||||| Sbjct 20638417 ATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAA 20638358 Query 200998 GAGTCTACTCTTCACCTTGT 201017 ||||| ||||| || ||||| Sbjct 20638357 GAGTCGACTCTGCATCTTGT 20638338 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || |||||||||||||||||| | ||| || | || |||||| |||||||| Sbjct 20638645 ATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAA 20638586 Query 200998 GAGTCTACTCTTCACCTTGT 201017 ||||| ||||| || ||||| Sbjct 20638585 GAGTCGACTCTGCATCTTGT 20638566 >seq1 Length=65476681 Score = 107 bits (118), Expect = 5e-18 Identities = 156/219 (71%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTT-TTGGACGTTGTAGTCAGCCAAAGT 199467 ||||| | || || | ||| ||||| ||||| || ||||| | | |||| ||| || Sbjct 54271007 CGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTTGGATATGTAAATCAGACAATGT 54270948 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| |||||||| || || ||||| ||||| || || || || ||| || Sbjct 54270947 GCGACCATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGGAATCCC 54270888 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || ||||| |||||| || | |||||| | | || || ||||| Sbjct 54270887 TTCTTTATCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTCGGCTCAACTTCCAA 54270828 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| ||||| || | || ||||||||||| || Sbjct 54270827 AGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTG 54270789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178908232134295