Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1 190 8e-43 seq789 154 6e-32 seq42 100 1e-15 seq14 93.3 2e-13 >seq1 Length=65476681 Score = 190 bits (210), Expect = 8e-43 Identities = 268/373 (72%), Gaps = 10/373 (3%) Strand=Plus/Plus Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291 || |||||||| || || || || || ||||||| | || |||||||| || Sbjct 49952517 AAGACTTTTGCCCCGGAGGAGATCTCTGCTATGGTGTTAGGGAAGATGAAAGAGTTTGCT 49952576 Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351 ||| ||| |||| |||||| ||||||| |||||||||| |||||||| || Sbjct 49952577 GAAGCTTATCTTGGCAAAAAGGTTACTCATGCAGTTGTTACTGTTCCAGCTTATTTTAAC 49952636 Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGG-ACATATTGCTGGTTTAAATGTTCTTCG 451410 || ||||| || |||||||| |||||||| || ||| ||||||||||| ||| | || || Sbjct 49952637 GACGCACAGCGCCAAGCAACCAAAGATGCTGGTACA-ATTGCTGGTTTGAATATACTCCG 49952695 Query 451411 AATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC 451470 |||||||||||||| || || ||||| | || || || |||| | |||||| Sbjct 49952696 GATTATTAATGAACCAACTGCTGCTGCAATTGCTTACGGTCTAG-------ATAAGAAAG 49952748 Query 451471 A-GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTAC 451529 | | || ||||||||| | |||||||| |||| ||||| ||| || ||| ||| Sbjct 49952749 ATGGTGAGAAAAATATTCTGATATTTGATCTTGGAGGAGGTACTTTCGACGTTTCATTAC 49952808 Query 451530 TTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAG 451589 || | ||||| | || || || |||||| || ||||||||||| || ||||| || | Sbjct 49952809 TTACGATTGAGAACGGAGTGTTCGAAGTAGTTGCTACCAATGGTGACACACATCTTGGTG 49952868 Query 451590 GTGAAGATATTGA 451602 | || || |||| Sbjct 49952869 GAGAGGACTTTGA 49952881 Score = 127 bits (140), Expect = 8e-24 Identities = 270/401 (67%), Gaps = 3/401 (1%) Strand=Plus/Plus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 ||||| ||||| | || | ||| | |||| || ||||| || ||||| | || || Sbjct 47704850 TATAAGGGTGAGAAAAAGATGTTTTCCGCTGAGGAGATTTCGTCAATGGTGTTGACGAAG 47704909 Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336 ||||| || || ||| ||| | || | || | ||| || || || || ||| Sbjct 47704910 ATGAAGGAGGTTGCTGAAAGTTATTTGGGCAGGACGGTGAGTGACGCTGTTATAACGGTT 47704969 Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396 || ||||| |||||||| ||||| |||||||| ||||||||||| ||| |||||| Sbjct 47704970 CCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGCTATAGCTGGT 47705029 Query 451397 TTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGA 451456 | ||||| | |||| ||||| || || ||||| || || | || ||||| | ||| Sbjct 47705030 CTTAATGTGTTGAGAATCATTAACGAGCCGACAGCTGCGGCAATTGCCTATGG-TTTGGA 47705088 Query 451457 AAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCAT 451516 || || | | || ||| | || |||||||||| ||||| || || | Sbjct 47705089 CAA--GAAGGTTGGTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTACATTT 47705146 Query 451517 GATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGAT 451576 ||| || | | | ||||| ||||| |||| || || ||| | || ||||||| Sbjct 47705147 GATGTGTCCATCTTGACGATTGAGGATGGTATATTCGAGGTGAAGTCTACTGCTGGTGAT 47705206 Query 451577 ACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGA 451617 || || | |||||||||||| |||| ||| || ||||| Sbjct 47705207 ACACACTTGGGAGGTGAAGATTTTGACAATCGCATGGTGGA 47705247 Score = 116 bits (128), Expect = 1e-20 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| |||||| | ||||||||||| || ||| | || ||||| | | Sbjct 54270558 ATGCAAATATTCGTGAAAACATTAACTGGTAAAACGATCACTTTGGAAGTTGAGCCGAGT 54270617 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || || |||||||| ||||| ||||| ||||||||| Sbjct 54270618 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGATAAAGAAGGGATTCCACCTGATCAA 54270677 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | || || | || || || || |||||||| | || ||| | ||||| ||| Sbjct 54270678 CAACGTCTGATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGCACATTGTCTGATTACAAT 54270737 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | || || | || |||||||| || || Sbjct 54270738 ATCCAGAAAGAGTCCACTCTTCACTTGGTGTT 54270769 Score = 102 bits (112), Expect = 3e-16 Identities = 151/213 (71%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || ||| ||||||||||||| || ||| | || ||||| | | Sbjct 54270786 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTTGAGCCGAGT 54270845 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || || |||||||| ||||| ||||| ||||||||| Sbjct 54270846 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGATAAAGAAGGGATTCCACCTGATCAA 54270905 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | || || | || || || || |||||||| | || ||| | |||| || Sbjct 54270906 CAACGTCTGATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGCACATTGTCTGATTTACAT 54270965 Query 391230 AT-TGATAAGGATGCAACACTTCACTTAGTATT 391261 || | || || | || |||||||| || || Sbjct 54270966 ATCCAAGAAAGAGTCCACTCTTCACTTGGTGTT 54270998 >seq789 Length=29961 Score = 154 bits (170), Expect = 6e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || ||||| ||||| |||||||| ||||| || ||||| | || Sbjct 821 ATGCAGATTTTCGTGAAGACACTTACTGGAAAAACTATAACTCTAGAAGTTGAGCCTGCT 762 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||||| |||| ||||| |||||||| ||||| || || || || ||| Sbjct 761 GATACAATAGAAGCAGTTAAGGCGAAAATCCAAGATAAAGAAGGCATCCCACCAGACCAA 702 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||||||||||| | || |||||||| ||||||||| ||||| | | || || ||| Sbjct 701 CAACGTTTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTACAAT 642 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| ||||||| || Sbjct 641 ATACAGAAGGAATCAACACTCCA 619 >seq42 Length=59508269 Score = 100 bits (110), Expect = 1e-15 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 248487 ACATGGACAAAAAGGAACAGTTGGTATTACTTTGCCACAAAGAGATATGCCTTTCACATC 248546 ||||||||||||||| || ||| ||| || | ||| ||||||||| ||||||| Sbjct 21232222 ACATGGACAAAAAGGTACTTGTGGAATTCGTTATCGTCAAGAAGATATGCCGTTCACATG 21232281 Query 248547 AGAAGGTATGACTCCAGATTTAATTTTCAATCCACATGGTATGCCTACACGTATGACTAT 248606 ||||| || || |||||| | ||| | |||||||| | ||| |||| ||||||||||| Sbjct 21232282 TGAAGGAATTACACCAGATATTATTATTAATCCACACGCTATTCCTAGTCGTATGACTAT 21232341 Query 248607 GGGACAATTA 248616 ||||| ||| Sbjct 21232342 TGGACATTTA 21232351 >seq14 Length=34464480 Score = 93.3 bits (102), Expect = 2e-13 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || |||||||||| || || || | || || || | Sbjct 20621627 AATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20621568 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| ||||| | | ||| || || ||||| || ||||| ||||||||||| || Sbjct 20621567 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20621508 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||||| || ||| | || || || | ||||||||| | ||| || | || || || Sbjct 20621507 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20621448 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | ||||| |||| | || | || ||| | ||| | ||| Sbjct 20621447 CATCCAGAAGGAGTCAACCTTACATCTTGTTTTACGCCTGCGTGGA 20621402 Score = 93.3 bits (102), Expect = 2e-13 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || |||||||||| || || || | || || || | Sbjct 20637635 AATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20637576 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| ||||| | | ||| || || ||||| || ||||| ||||||||||| || Sbjct 20637575 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20637516 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||||| || ||| | || || || | ||||||||| | ||| || | || || || Sbjct 20637515 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20637456 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | ||||| |||| | || | || ||| | ||| | ||| Sbjct 20637455 CATCCAGAAGGAGTCAACCTTACATCTTGTTTTACGCCTGCGTGGA 20637410 Score = 91.5 bits (100), Expect = 6e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || ||| |||| || || ||||| || | || || || | Sbjct 20622083 AATGCAGATATTCGTAAAGACATTGACAGGGAAGACTATAACATTGGAGGTGGAGCCTAG 20622024 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| ||||| | | ||| || || ||||| || ||||| ||||||||||| || Sbjct 20622023 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20621964 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||||| || ||| | || || || | ||||||||| | ||| || | || || || Sbjct 20621963 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20621904 Query 391229 TAT 391231 || Sbjct 20621903 CAT 20621901 Score = 91.5 bits (100), Expect = 6e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || ||| |||||||||| || || || | || || || | Sbjct 20638319 AATGCAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20638260 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| ||||| | | ||| || || ||||| || ||||| ||||||||||| || Sbjct 20638259 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20638200 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||||| || ||| | || || || | ||||||||| | ||| || | || || || Sbjct 20638199 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20638140 Query 391229 TAT 391231 || Sbjct 20638139 CAT 20638137 Score = 91.5 bits (100), Expect = 6e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || ||| |||||||||| || || || | || || || | Sbjct 20638547 AATGCAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20638488 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| ||||| | | ||| || || ||||| || ||||| ||||||||||| || Sbjct 20638487 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20638428 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||||| || ||| | || || || | ||||||||| | ||| || | || || || Sbjct 20638427 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20638368 Query 391229 TAT 391231 || Sbjct 20638367 CAT 20638365 Score = 91.5 bits (100), Expect = 6e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || ||| |||| || || ||||| || | || || || | Sbjct 20638775 AATGCAGATATTCGTAAAGACATTGACAGGGAAGACTATAACATTGGAGGTGGAGCCTAG 20638716 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| ||||| | | ||| || || ||||| || ||||| ||||||||||| || Sbjct 20638715 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20638656 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||||| || ||| | || || || | ||||||||| | ||| || | || || || Sbjct 20638655 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20638596 Query 391229 TAT 391231 || Sbjct 20638595 CAT 20638593 Score = 87.8 bits (96), Expect = 7e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || |||||||||| || || || | || || || | Sbjct 20621855 AATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20621796 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| ||||| | | ||| || || ||||| || ||||| ||||||||||| || Sbjct 20621795 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20621736 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||||| || ||| | || || || | ||||||||| | ||| || | || || || Sbjct 20621735 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20621676 Query 391229 TAT 391231 || Sbjct 20621675 CAT 20621673 Score = 87.8 bits (96), Expect = 7e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || |||||||||| || || || | || || || | Sbjct 20637863 AATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20637804 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| ||||| | | ||| || || ||||| || ||||| ||||||||||| || Sbjct 20637803 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20637744 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||||| || ||| | || || || | ||||||||| | ||| || | || || || Sbjct 20637743 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20637684 Query 391229 TAT 391231 || Sbjct 20637683 CAT 20637681 Score = 87.8 bits (96), Expect = 7e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || |||||||||| || || || | || || || | Sbjct 20638091 AATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20638032 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| ||||| | | ||| || || ||||| || ||||| ||||||||||| || Sbjct 20638031 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20637972 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||||| || ||| | || || || | ||||||||| | ||| || | || || || Sbjct 20637971 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20637912 Query 391229 TAT 391231 || Sbjct 20637911 CAT 20637909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975695997205580