Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1 309 2e-78 >seq1 Length=65476681 Score = 309 bits (342), Expect = 2e-78 Identities = 965/1477 (65%), Gaps = 28/1477 (2%) Strand=Plus/Minus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 || ||| | |||| || || |||||||| || ||||| | |||||| || || ||||| Sbjct 47706009 TTGTCAACAGCAGATACGTTCAGAATACCGTTCGCATCTATATCAAACGTCACCTCAATC 47705950 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 ||||| || | ||||||||||||| ||| | | || | || || ||| Sbjct 47705949 TGAGGAGTACCACGAGGAGCAGGTGGGATACCTGATAGTTCGAACTTACCAAGCAGATTG 47705890 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429 || || ||||| | | || || |||||||| | |||||| || ||| ||| || Sbjct 47705889 TTGTCCTTAGTCAGTGCACGCTCGCCCTCGAACACCTGGATAAGCACACCAGGTTGGTTG 47705830 Query 517430 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 517489 || || || || || || | | | ||| |||||||| ||||| | | ||| Sbjct 47705829 TCCGAGTACGTCGTGAACGTTTGAGTCTGTTTCGTCGGAATTGTCGTGTTACGCTTAATC 47705770 Query 517490 ATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA-C 517548 | | ||||| | ||| || || ||||| | ||| | || || |||| || |||| | Sbjct 47705769 AAAGCCGTCATCACACCTCCAGCCGTTTCAAGACCCAATGATAGTGGAGCTACGTCAAGC 47705710 Query 517549 TAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAG 517607 | |||| | || | ||| || || | |||| ||||||||||| || | || Sbjct 47705709 AACAACAAG-TCCTGCACAGCCTCA-CACTTATCACCACTTAGAATAGCTGCCTGCACAG 47705652 Query 517608 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 517667 | |||||||| || ||||||||||| ||||||| || || || | | ||| || |||| Sbjct 47705651 CTGCACCATAAGCCACAGCTTCATCCGGATTAATAGATTTGTTCAACTCTTTCCCGTTGA 47705592 Query 517668 AAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACA 517726 | || | ||| || | || | || ||||| ||||||| || || ||||| || || Sbjct 47705591 AGAAGTCTTGCAACAGCTTCTGC-ACTTTAGGGATACGAGTGGAACCACCAACCAACACT 47705533 Query 517727 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 517786 || || || | ||| || ||||||| || | ||| |||| | || |||||||| || Sbjct 47705532 ATGTCGTGAATCTGGGACTTATCCATCTTAGCATCTCGTAAAGCCTTCTCAACGGGATCC 47705473 Query 517787 AGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGA---GTG 517843 | | | || | || | | | || || ||| || | ||| | ||| Sbjct 47705472 AACGTACCACGGAATAGATCGGCATTCAACTCCTCAAATCGTGCACGAGTGATCACCGTG 47705413 Query 517844 ACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAA 517903 | | ||||||| || || |||| || |||| || | | || || | ||| Sbjct 47705412 ---TAAAAATCAATACCATCACACAACGAGTCAATCTCCAGATTCGTCTGGGCACTCGAA 47705356 Query 517904 GATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT 517963 | || |||||| ||||||||||| |||||||| || | || || || ||| || Sbjct 47705355 CTCAATGTACGTTTCGCACGTTCACACGCTGTCCTCAGACGACGCAATGCAC--GCTTAT 47705298 Query 517964 TGATTCAAATCTGTTT--TATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGA- 518020 || | | ||| | ||| | ||||| ||| ||| |||| ||| | || | || | Sbjct 47705297 TGCTACGAATGTCTTTATTGTATTTCTTCTGGAACTCTTTCACAAAG--TGATCCACCAT 47705240 Query 518021 -CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 518079 ||||| |||||||||||||||||||| | |||| || | |||| | || | ||| Sbjct 47705239 GCGATTGTCAAAATCTTCACCTCCCAAGTGTGTATCACCAGCAGTAGACTTCACCTCGAA 47705180 Query 518080 AAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAAT 518139 | ||||| |||| | ||| | | |||||| || |||||||||| |||||| || Sbjct 47705179 TATACCATCCTCAATCGTCAAGATGGACACATCAAATGTACCACCACCCAAATCAAATAT 47705120 Query 518140 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199 | ||||| || | || || || | |||||| |||| || ||||| || Sbjct 47705119 CAACACATTACGCTCACCACCAACCTTCTTGTCCAAACCATAGGCAATTGCCGCAGCTGT 47705060 Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 || || ||||| |||||||| |||||||||||||| || ||||||||||| || || Sbjct 47705059 CGGCTCGTTAATGATTCTCAACACATTAAGACCAGCTATAGCACCTGCATCTTTCGTTGC 47705000 Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA-CTTCTT 518318 ||| | ||| || || || || |||||||| || ||||| || ||| | | | || | Sbjct 47704999 TTGACGTTGACTGTCATTGAAGTAAGCAGGAACCGTTATAACAGCGTCACTCACCGTCCT 47704940 Query 518319 TACCAATATAAGCGCTT---GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTT 518375 |||| |||| ||| || | ||||| || | || | |||||| ||||| | Sbjct 47704939 GCCCAA-ATAA---CTTTCAGCAACCTCCTTCATCTTCGTCAACACCATTGACGAAATCT 47704884 Query 518376 GTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTAC 518435 || | |||| | ||| ||| | ||| || || | | || || Sbjct 47704883 CCTCAGCGGAAAACATCTTTTTCTCACCCTTATACTCAACACAAATCTTCAGCTTCCCAC 47704824 Query 518436 CAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAA 518495 | || | | | || | |||||||| | |||||||| || || | | |||| | Sbjct 47704823 CGACTTGAGTCACCTCGAATGGCCAATGCTTCATATCACTCTGCACTGATGGATCATCGA 47704764 Query 518496 AATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTT 518555 | | ||| |||| || || |||||||| | ||||| ||||| || || || ||| Sbjct 47704763 ACCGACGACCGATTAGACGCTTCGCATCAAACACTGTATTTGTTGGGTTCATCGCCACTT 47704704 Query 518556 GATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAG 518615 | | || ||| |||| ||||| | | | || | ||||| || | ||||| || | Sbjct 47704703 GGTTCTTCGCTCCATCACCAATTAAACGCTCAGAGTCTGTGAACGCCACATAACTCGGTG 47704644 Query 518616 TTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTA 518675 | || | ||||| || ||||| ||||| || || |||||||||| || | ||||| | Sbjct 47704643 TCGTTCTGTTACCCTGGTCATTGGCAATTATCTCCACTTTACCATGCTGGAAAACACCAA 47704584 Query 518676 CACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 |||| | | ||||| || | ||| || ||||| || Sbjct 47704583 CACACGAATATGTTGTACCAAGATCGATTCCAATGGC 47704547 Score = 178 bits (196), Expect = 1e-38 Identities = 355/521 (68%), Gaps = 15/521 (3%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || ||||| ||||| || |||| |||||||||||||||||||||||||| | | | | Sbjct 49952746 TTCTTATCTAGACCGTAAGCAATTGCAGCAGCAGTTGGTTCATTAATAATCCGGAGTATA 49952687 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || | |||||||||| | || |||||||| || ||||| | |||| ||||||||||| Sbjct 49952686 TTCAAACCAGCAATTGTACCAGCATCTTTGGTTGCTTGGCGCTGTGCGTCGTTAAAATAA 49952627 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || |||||||||| ||| |||| ||| || | ||| |||| |||||| || | | Sbjct 49952626 GCTGGAACAGTAACAACTGCATGAGTAACCTTTTTGCCAAGATAAGCTTCAGCAAACTCT 49952567 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTT 518404 ||||| || | ||| | ||| | || || | || |||| | | |||| ||| Sbjct 49952566 TTCATCTTCCCTAACACCATAGCAGAGATCTCCTCCGGGGCAAAAGTCTTGACTTC---- 49952511 Query 518405 TGAT-----ATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCC 518459 |||| ||| ||||| | ||| || || || ||||| ||| ||| || Sbjct 49952510 TGATCCAACGTGA-ACTTCGACATACGGCTTGTTCTTTTTATTAACAACGGAAAAAGGGA 49952452 Query 518460 AGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 518519 | | | || || || ||| || |||| || | ||| ||||| | || || Sbjct 49952451 AATGAGTTATGTCATTCTGTACAGTTGATTCATCGAACTTTCTTCCAATAAGTCTCTTGA 49952392 Query 518520 CATCAAAAATAGTATTGGTTGGATT-AATTGCAGCTTGATATTTGGCTGCATCTCCAATC 518578 | || |||| || || ||||| || |||| || | ||| || |||||||||||| Sbjct 49952391 CGTCGAAAACTGTGTTTTCCGGATTCGATGTCAGC-TGGTTTTTAGCAGCATCTCCAATC 49952333 Query 518579 AGATGTT---CTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCA 518635 || | | || | || |||| |||||||| ||||| | | ||||| |||||| Sbjct 49952332 AGTCGCTCGCCTTCCGGAGTGAATGCCACATATGAGGGAGTAATCCTGTTACCCTGATCA 49952273 Query 518636 TTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTAC 518676 |||||||||||||||||| || ||| ||||||| || Sbjct 49952272 TTCGCAATAATTTCAACTCGGCCTCCTTGAAATACACCAAC 49952232 Score = 111 bits (122), Expect = 1e-18 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 322239 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 322298 ||| |||||| |||| || || ||||||||||||||||| || || | || |||| Sbjct 49952739 CTAGACCGTAAGCAATTGCAGCAGCAGTTGGTTCATTAATAATCCGGAGTATATTCAAAC 49952680 Query 322299 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 322358 | |||||| || ||| ||| |||||||| | ||||||||| |||||||| ||||| | Sbjct 49952679 CAGCAATTGTACCAGCATCTTTGGTTGCTTGGCGCTGTGCGTCGTTAAAATAAGCTGGAA 49952620 Query 322359 CAGTAATAACTGCTTTATTAA 322379 |||||| |||||| | | ||| Sbjct 49952619 CAGTAACAACTGCATGAGTAA 49952599 Score = 93.3 bits (102), Expect = 3e-13 Identities = 194/289 (67%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 ||||| ||||||||||||||||| || | ||||| || | |||| | || | ||| Sbjct 51115312 CGATTGTCAAAATCTTCACCTCCAAAGTGCGTATTACCAGCAGTAGACTTCACCTCGAAT 51115253 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | ||||| |||| | | | || |||||| || |||||||||| ||||| || Sbjct 51115252 ACACCATCCTCAATCATCTAGATAGACACATCAAATGTACCACCACCCAAGTCAAATATC 51115193 Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 | ||||| ||| | || || || | |||||| |||| || | | || Sbjct 51115192 AACACATTACGTTCACCACCAACTTTCTTGTCCAAACCATAGGCAATTGCCTAAACTGTC 51115133 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || || ||||| |||||||| |||||||||||| | | |||||||||| || ||| Sbjct 51115132 GGCTCGTTAATGATTCTCAACACATTAAGACCAACTACAGCACCTGCATCTTGCGTTGCT 51115073 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAG 518309 | | ||| || | || || |||||||| | ||||| | |||| Sbjct 51115072 TCACGTTGACTGTCACTGAAGTAAGCAGGAACTGCTATAACTTCGTCAG 51115024 Score = 89.7 bits (98), Expect = 4e-12 Identities = 193/289 (67%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 ||||| ||||||||||||||||| || | ||||| | | |||| | || | ||| Sbjct 51125252 CGATTGTCAAAATCTTCACCTCCAAAGTGCGTATTACGAGCAGTAGACTTCACCTCGAAT 51125311 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | ||||| |||| | | | || |||||| || |||||||||| ||||| || Sbjct 51125312 ACACCATCCTCAATCATCTAGATAGACACATCAAATGTACCACCACCCAAGTCAAATATC 51125371 Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 | ||||| ||| | || || || | |||||| |||| || | | || Sbjct 51125372 AACACATTACGTTCACCACCAACTTTCTTGTCCAAACCATAGGCAATTGCCTAAACTGTC 51125431 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || || ||||| |||||||| |||||||||||| | | |||||||||| || ||| Sbjct 51125432 GGCTCGTTAATGATTCTCAACACATTAAGACCAACTACAGCACCTGCATCTTGCGTTGCT 51125491 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAG 518309 | | ||| || | || || |||||||| | ||||| | |||| Sbjct 51125492 TCACGTTGACTGTCACTGAAGTAAGCAGGAACTGCTATAACTTCGTCAG 51125540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780778483384810