Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1 398 1e-105 >seq1 Length=65476681 Score = 398 bits (440), Expect = 1e-105 Identities = 1062/1603 (66%), Gaps = 24/1603 (1%) Strand=Plus/Minus Query 6565 CTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTT 6624 ||| ||||| ||| | || ||||| |||||||| |||||| ||||| || ||||| Sbjct 47706124 CTTCTCATCCTCAGCCTTGTACTTGTCCGCATCGGCTACCATCCGCTCAATCTCCTCTTT 47706065 Query 6625 CGATAATCTCCCCTTATCATTCGTAATCGTAATCTT-TTCGGATTTACCCGAGGCCTTAT 6683 ||| || | ||||| ||||| || ||||| ||||| ||| | || || | |||| | Sbjct 47706064 CGACAAACGACCCTTGTCATTTGTGATCGTTATCTTGTTCTGCTTC-CCAGTACCCTTGT 47706006 Query 6684 CTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTG 6743 | ||||| ||| |||| |||||| || ||||| | ||| ||| | || | ||| || | Sbjct 47706005 CAACAGCAGATACGTTCAGAATACCGTTCGCATCTATATCAAACGTCACCTCAATCTGAG 47705946 Query 6744 GTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTAT 6803 | ||||| | || || | ||| ||||| | || || || ||||||| | | |||| | Sbjct 47705945 GAGTACCACGAGGAGCAGGTGGGATACCTGATAGTTCGAACTTACCAAGCAGATTGTTGT 47705886 Query 6804 CCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTT 6863 || | | | ||| || || || | || | || ||| ||||||| || || Sbjct 47705885 CCTTAGTCAGTGCACGCTCGCCCTCGAACACCTGGATAAGCACACCAGGTTGGTTGTCCG 47705826 Query 6864 GTGCCGTTGAGAAGATTTGT-TCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACC 6922 ||| | ||| |||| ||| | || | ||||| ||||| || | | ||| | Sbjct 47705825 AGTACGTCGTGAACGTTTGAGTCTGT-TTCGTCGGAATTGTCGTGTTACGCTTAATCAAA 47705767 Query 6923 GGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGT 6982 | ||||| | ||| || ||||| || || | || || || | ||||| | | Sbjct 47705766 GCCGTCATCACACCTCCAGCCGTTTCAAGACCCAATGATAGTGGAGCTACGTCAAGCAAC 47705707 Query 6983 AACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCC 7042 |||| ||| || |||| || | ||||| ||| || || || || || | || Sbjct 47705706 AACAAGTCCTGCACAGCCTCACACTTATCACCACTTAGAATAGCTGCCTGCACAGCTGCA 47705647 Query 7043 CCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAA 7102 || || || || || ||||| || ||||| | ||| |||| ||||| ||||| || | Sbjct 47705646 CCATAAGCCACAGCTTCATCCGGATTAATAGATTTGTTCAACTCTTTCCCGTTGAAGAAG 47705587 Query 7103 TCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCA 7162 || |||| | || | ||| ||||| || || || ||||| ||||| || || || Sbjct 47705586 TCTTGCAACAGCTTCTGCACTTTAGGGATACGAGTGGAACCACCAACCAACACTATGTCG 47705527 Query 7163 TTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACAT 7222 | | | || ||||| ||||| | ||||| | | || || || || |||| || | Sbjct 47705526 TGAATCTGGGACTTATCCATCTTAGCATCTCGTAAAGCCTTCTCAACGGGATCCA-ACGT 47705468 Query 7223 TT-ACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAA 7281 |||||| | || | || |||||||| |||||||| || || || || || Sbjct 47705467 ACCACGGAATAGATCGGCATTCAACTCCTCAAATCGTGCACGAGTGATCACCGTGTAAAA 47705408 Query 7282 ATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGT 7341 ||||| || || | ||||| ||||| || | | || || || ||||| || || Sbjct 47705407 ATCAATACCATCACACAACGAGTCAATCTCCAGATTCGTCTGGGCACTCGAACTCAATGT 47705348 Query 7342 TCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAAT 7401 || || || || |||||||| || | | |||||| | |||||| || | ||| Sbjct 47705347 ACGTTTCGCACGTTCACACGCTGTCCTCAGACGACGCAATGCACGCTTATTGCTACGAAT 47705288 Query 7402 ATCTTTCTTATGTTTACGTTTAAACTCTT-CAGAGAAGTG-TCGAAGGAGTCTCGAAT-- 7457 ||||| || | ||| | ||||||| || | ||||| || | | ||| | Sbjct 47705287 GTCTTTATTGTATTTCTTCTGGAACTCTTTCACA-AAGTGATCCACCATG---CGATTGT 47705232 Query 7458 CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTC 7517 | ||||||||||| |||||||||||||| || || || | || || || || ||||| Sbjct 47705231 CAAAATCTTCACCTCCCAAGTGTGTATCACCAGCAGTAGACTTCACCTCGAATATACCAT 47705172 Query 7518 CTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGT 7577 | ||||| | || | || |||||||| ||||||||||||| ||||| || | || | Sbjct 47705171 CCTCAATCGTCAAGATGGACACATCAAATGTACCACCACCCAAATCAAATATCAACACAT 47705112 Query 7578 TCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 | || | | ||||| || | ||| || || || ||||| || || || || | Sbjct 47705111 TACGCTCACCACCAACCTTCTTGTCCAAACCATAGGCAATTGCCGCAGCTGTCGGCTCGT 47705052 Query 7638 TAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 |||| || | || ||| || || ||||| |||| | ||||||||||| ||||| ||| Sbjct 47705051 TAATGATTCTCAACACA-TTAAGACCAGCTATAGCACCTGCATCTTTCGTTGCTTGACGT 47704993 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || || ||||| || || ||||||| || ||||| | || || | || | | Sbjct 47704992 TGACTGTCATTGAAGTAAGCAGGAACCGTTATAACAGCGTCACTCACCGTCCTGCCCAAA 47704933 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || ||| || | || ||||| || || | ||||| || |||||||| ||||| | | Sbjct 47704932 TAACTTTCAGCAACCTCCTTCATCTTCGTCAACACCATTGACGAAATCTCCTCAGCGGAA 47704873 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 ||| || | ||||| ||| | ||||| |||| | | || | || | | | Sbjct 47704872 AACATCTTTTTCTCACCCTTATACTCAACACAAATCTTCAGCTT---CCCACCGACTTGA 47704816 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGG-TCCGAAAACTTTCT 7935 | |||| | | ||||| |||||||| || | ||| ||| || ||| | Sbjct 47704815 GTCACCTCGAATGGCCAATGCTTCATATC-ACTCTGCACTGATGGATCATCGAACCGACG 47704757 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 ||||| |||||||| |||||||| ||||| ||| | |||||||| || ||||||||| Sbjct 47704756 ACCGATTAGACGCTTCGCATCAAACACTGTATTTGTTGGGTTCATCGCCACTTGGTTCTT 47704697 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 ||| | || || || | ||| || | || || ||||| || || || ||||| Sbjct 47704696 CGCTCCATCACCAATTAAACGCTC---AGAGTCTGTGAACGCCACATAACTCGGTGTCGT 47704640 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || || || ||||| || ||||| || || || | | || | || || || || Sbjct 47704639 TCTGTTACCCTGGTCATTGGCAATTATCTCCACTTTACCATGCTGGAAAACACCAACACA 47704580 Query 8116 CGAATACGTTGTTCCTAAATCAATACCGATTGCTTGAGTCATT 8158 |||||| ||||| || | ||| || || || || | || |||| Sbjct 47704579 CGAATATGTTGTACCAAGATCGATTCCAATGGCGTTAGGCATT 47704537 Score = 132 bits (146), Expect = 6e-26 Identities = 202/287 (70%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 7532 AACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCT 7591 || ||||| || || ||||| || || || ||||| || || | || | || | ||| Sbjct 49952806 AATGAAACGTCGAAAGTACCTCCTCCAAGATCAAATATCAGAATATTTTTCTCACCATCT 49952747 Query 7592 TTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGA 7651 || |||||| |||||||| || || || || || ||||||||||||||||| || || Sbjct 49952746 TT---CTTATCTAGACCGTAAGCAATTGCAGCAGCAGTTGGTTCATTAATAATCCGGAGT 49952690 Query 7652 CAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAG 7711 |||| |||||||| || | |||||||| || ||||| || || | |||||||| Sbjct 49952689 ATATTCAAACCAGCAATTGTACCAGCATCTTTGGTTGCTTGGCGCTGTGCGTCGTTAAAA 49952630 Query 7712 TAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATA 7771 || || || || || || || || | || || || || || ||||| | ||| || | Sbjct 49952629 TAAGCTGGAACAGTAACAACTGCATGAGTAACCTTTTTGCCAAGATAAGCTTCAGCAAAC 49952570 Query 7772 TCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAA 7818 |||||||| || | ||||| | || ||||| || | ||||| Sbjct 49952569 TCTTTCATCTTCCCTAACACCATAGCAGAGATCTCCTCCGGGGCAAA 49952523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635125773843400