Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 156 9e-33 seq14 154 3e-32 seq789 116 8e-21 >seq1 Length=65476681 Score = 156 bits (172), Expect = 9e-33 Identities = 165/216 (76%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | |||||||||||||||||| || ||||||||||| | | || | ||||| Sbjct 54270770 CAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTGCGACCATC 54270711 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| ||||||||||| || ||||| || |||||||| || || ||||| |||||||| || Sbjct 54270710 TTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGGAATCCCTTCTTTATC 54270651 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAAC 195104 ||| || || ||| || |||||||||||||| ||| || ||||| | || | Sbjct 54270650 TTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTCGGCTCAACTTCCAAAGTGAT 54270594 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || ||||| ||||| | |||||| Sbjct 54270593 CGTTTTACCAGTTAATGTTTTCACGAATATTTGCAT 54270558 Score = 132 bits (146), Expect = 1e-25 Identities = 161/217 (74%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTT-TTGAATATTGTAATCGGCAAGAGTTCTCCCAT 194986 ||| || | |||||||||||||||||| ||| |||| |||| | | || | |||| Sbjct 54270999 CAACACCAAGTGAAGAGTGGACTCTTTCTTGGATATGTAAATCAGACAATGTGCGACCAT 54270940 Query 194987 CTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGT 195046 |||| ||||||||||| || ||||| || |||||||| || || ||||| |||||||| | Sbjct 54270939 CTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGGAATCCCTTCTTTAT 54270880 Query 195047 CTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAA 195103 |||| || || ||| || |||||||||||||| ||| || ||||| | || | Sbjct 54270879 CTTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTCGGCTCAACTTCCAAAGTGA 54270823 Query 195104 CCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| || || || || | ||||| Sbjct 54270822 TCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 54270786 >seq14 Length=34464480 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||| |||||||| || || ||||| || | ||||| | |||||||| Sbjct 20621874 ACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 20621933 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||||||| |||||||| | ||||||||||| |||||||| |||||||||||||| Sbjct 20621934 AACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGG 20621993 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || || |||||||| || || | ||||| || | || | ||||| Sbjct 20621994 ATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAATGTTATAGTCTTC 20622053 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||||||| || |||||||| | |||||| Sbjct 20622054 CCTGTCAATGTCTTTACGAATATCTGCATT 20622083 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||| |||||||| || || ||||| || | ||||| | |||||||| Sbjct 20638566 ACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 20638625 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||||||| |||||||| | ||||||||||| |||||||| |||||||||||||| Sbjct 20638626 AACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGG 20638685 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || || |||||||| || || | ||||| || | || | ||||| Sbjct 20638686 ATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAATGTTATAGTCTTC 20638745 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||||||| || |||||||| | |||||| Sbjct 20638746 CCTGTCAATGTCTTTACGAATATCTGCATT 20638775 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||| |||||||| || || ||||| || | ||||| | |||||||| Sbjct 20621646 ACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 20621705 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||||||| |||||||| | ||||||||||| |||||||| |||||||||||||| Sbjct 20621706 AACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGG 20621765 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || || |||||||| || || | ||||| || | || | |||||| Sbjct 20621766 ATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTA 20621825 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || ||||| || || || || | ||||||| Sbjct 20621826 CCAGTCAACGTCTTCACAAATATTTGCATT 20621855 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||| |||||||| || || ||||| || | ||||| | |||||||| Sbjct 20637654 ACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 20637713 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||||||| |||||||| | ||||||||||| |||||||| |||||||||||||| Sbjct 20637714 AACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGG 20637773 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || || |||||||| || || | ||||| || | || | |||||| Sbjct 20637774 ATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTA 20637833 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || ||||| || || || || | ||||||| Sbjct 20637834 CCAGTCAACGTCTTCACAAATATTTGCATT 20637863 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||| |||||||| || || ||||| || | ||||| | |||||||| Sbjct 20637882 ACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 20637941 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||||||| |||||||| | ||||||||||| |||||||| |||||||||||||| Sbjct 20637942 AACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGG 20638001 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || || |||||||| || || | ||||| || | || | |||||| Sbjct 20638002 ATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTA 20638061 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || ||||| || || || || | ||||||| Sbjct 20638062 CCAGTCAACGTCTTCACAAATATTTGCATT 20638091 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||| |||||||| || || ||||| || | ||||| | |||||||| Sbjct 20638110 ACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 20638169 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||||||| |||||||| | ||||||||||| |||||||| |||||||||||||| Sbjct 20638170 AACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGG 20638229 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || || |||||||| || || | ||||| || | || | |||||| Sbjct 20638230 ATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTA 20638289 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || ||||| || || || || | ||||||| Sbjct 20638290 CCAGTCAATGTCTTCACAAATATTTGCATT 20638319 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||| |||||||| || || ||||| || | ||||| | |||||||| Sbjct 20638338 ACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 20638397 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||||||| |||||||| | ||||||||||| |||||||| |||||||||||||| Sbjct 20638398 AACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGG 20638457 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || || |||||||| || || | ||||| || | || | |||||| Sbjct 20638458 ATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTA 20638517 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || ||||| || || || || | ||||||| Sbjct 20638518 CCAGTCAATGTCTTCACAAATATTTGCATT 20638547 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 |||||||| || | || ||||| || || || ||||| || | ||||| | |||||| Sbjct 20621415 AAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 20621474 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | ||||||||| |||||||| | ||||||||||| |||||||| |||||||||||| Sbjct 20621475 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 20621534 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || || || || || |||||||| || || | ||||| || | || | |||| Sbjct 20621535 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTC 20621594 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || ||||| || || || || | ||||||| Sbjct 20621595 TTACCAGTCAACGTCTTCACAAATATTTGCATT 20621627 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 |||||||| || | || ||||| || || || ||||| || | ||||| | |||||| Sbjct 20637423 AAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 20637482 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | ||||||||| |||||||| | ||||||||||| |||||||| |||||||||||| Sbjct 20637483 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 20637542 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || || || || || |||||||| || || | ||||| || | || | |||| Sbjct 20637543 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTC 20637602 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || ||||| || || || || | ||||||| Sbjct 20637603 TTACCAGTCAACGTCTTCACAAATATTTGCATT 20637635 >seq789 Length=29961 Score = 116 bits (128), Expect = 8e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || || || || || || |||||||| |||| |||||||| |||||||| Sbjct 613 ACAAGATGGAGTGTTGATTCCTTCTGTATATTGTAGTCGGAAAGAGTTCGTCCATCTTCC 672 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || || || | |||||||||||||| || ||||||||||| ||||| Sbjct 673 AGTTGTTTGCCAGCAAAAATTAAACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGG 732 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || || || || || | | || ||||| || || | || ||| Sbjct 733 ATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGAGTTATAGTTTTT 792 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 793 CCAGTAAGTGTCTTCACGAAAATCTGCAT 821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109469019518795