Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq862 286 4e-72 seq34 109 6e-19 >seq862 Length=148971 Score = 286 bits (316), Expect = 4e-72 Identities = 607/905 (67%), Gaps = 46/905 (5%) Strand=Plus/Minus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 ||||||||| |||||| || |||||||| ||||| ||||| || | |||||| ||| Sbjct 30586 TTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCTTTCCTTCGATTGATATGTTTTC 30527 Query 18732 CATAAAATCAAATGGATTTTT-------TACAT----------------TATATA----- 18763 ||| || ||||| ||||| | ||||| || ||| Sbjct 30526 CATGAAGTCAAAAGGATTGTCAGAATGATACATCTAAAAGGAAAACAATTAAATAGAAGA 30467 Query 18764 ttt-------ttttGA-ATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATA 18815 ||| |||| | | || | ||| | ||||| || || || | ||||| ||| || Sbjct 30466 TTTGCAAACCTTTTCATAACCAAGTTCAACCAGTAGCCTGTCAGCGATAAATTCAATGTA 30407 Query 18816 TGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAA 18875 ||||| | |||||||| || ||||| | || ||||| || || | | ||| Sbjct 30406 CTGACACATCAATTTGCAATTCATCCCAATTAAGCTGACTGGTAGGGCTTCGGATAAAAA 30347 Query 18876 TTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGG 18935 || |||||||| || |||||| ||| || || |||| | |||| | ||||| Sbjct 30346 CTCCTGTTCTATCAGAACCGCCTCTCTTATTATTGACTCAACACGTTCTT---TGGGAGG 30290 Query 18936 GTAT---AGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCT 18992 | | | || ||||||||||| | ||| || ||||||||||||||||| |||||||| Sbjct 30289 CTTTTTGATAATATGTTTAAACAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCT 30230 Query 18993 ACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAA 19052 ||| || |||||||| ||| | | |||||||| || |||| ||| || | |||||| Sbjct 30229 ACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAA 30170 Query 19053 TATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCT 19112 ||||| ||||| |||||||| || | |||||| ||||||||||||||||||| | Sbjct 30169 TATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAACTAAGCG 30110 Query 19113 TTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTT 19172 |||| || || ||| | | || | |||||| | | |||||| | |||||| || Sbjct 30109 TTCTGCAAAAGTAGATTTAGAATCACCAATCCAATCTAATGCCCACTGAGCCTTTTTAGC 30050 Query 19173 TACACATGGCA--TTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTA 19230 ||||| | | ||| || ||| | || || ||| | | || | | ||||| Sbjct 30049 AACACAAGTTAAGTTG-CT-TATGGCGTTGAAGAGAAAGTCCCTTTCTTTAGAGTCTTTG 29992 Query 19231 ACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGA 19290 | |||| ||| ||||||||| ||||||||| || |||||||| || ||||| ||||| Sbjct 29991 ATGTATGTATCAATCAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGC 29932 Query 19291 AATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAA 19350 | || || ||||| | | |||| ||||| ||||| | || | ||| | | Sbjct 29931 ATCCCATAGAAACAACGAACCTCTGGAATCTGGACTTCTTGGCTGAAGCGTTCCAGGAGG 29872 Query 19351 TTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGT 19410 || || || ||||| ||||| || ||||| || ||||| || | || ||||| Sbjct 29871 TTCTCGAGGACAATTCCGTCACTCGCCGCAAAGAAGGCTAACACGTAGGATATGAAATGA 29812 Query 19411 TTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCA 19470 ||| | |||| | | ||||| | | |||||| |||||||| || ||||| Sbjct 29811 CGTTCCCCAACTTTTAAAGACTCCCAATGTATGAAATCTTTGGATAAATCGACCTCTTCC 29752 Query 19471 ACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATA 19530 || ||||||||||| || | || || ||||| | | ||| | ||| | |||| ||| Sbjct 29751 ACAGTCCAAAAAGAGGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATG 29692 Query 19531 GGAAA 19535 || || Sbjct 29691 GGGAA 29687 >seq34 Length=32115376 Score = 109 bits (120), Expect = 6e-19 Identities = 260/386 (67%), Gaps = 9/386 (2%) Strand=Plus/Plus Query 47049 CTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATA 47108 ||||| |||||||||||||||| |||| ||| ||| | |||| | | ||| | Sbjct 8062586 CTCCAAGCATAGAAATGCATACTTGTTATTTTTCCATAGTTCGGTTGAGCGAGATGTAGG 8062645 Query 47109 TTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACC 47168 ||||||||||| ||||| |||||||||| | | | || |||||||| | ||| | Sbjct 8062646 TTAAGAGATTGGCTCTGGTCAATAAATGGGGCACGGCCGGCAGCCATATCGATAATCTTC 8062705 Query 47169 CTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATTAG-- 47226 |||| | |||||||||||||| || || | |||| | || | | ||| | | Sbjct 8062706 TTTTGCGAAATCTCCCATACTGTCTTGTACAAAGGTTTTAGCTCCT-TAGGAATTCCGTC 8062764 Query 47227 --TATTTTGAATAGATCCTCCgttttctataattttgttttttaa-ttcatttgaccaaa 47283 ||| ||||||||| || | | || | | | | |||||| ||| | ||||| | Sbjct 8062765 GATATGTTGAATAGAACC-CTGATTCAAAACAATCGCTGTTTTAAGTTCTTCCGACCACA 8062823 Query 47284 gttttcgttcagttaatgtttttaa-AAGATGAGGATTAACAATTTGAAATTCTCCAGAT 47342 | | || || ||| | | || ||||| ||| || ||||| || ||||| ||| Sbjct 8062824 ACTCTAATTTAG-TAAGATCATCAAGAAGATAAGGGTTCACAATCTGGAATTCACCACTC 8062882 Query 47343 AGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAA 47402 | || | || | ||| || ||||| | ||||| | || ||||| || |||| | Sbjct 8062883 AACACACGGCGAGAAAATACGTTGCTTGTGAAAGGTTCAGTCGACTCATTGTTCCCAAGA 8062942 Query 47403 ATTTGAGCAGTTGATGCTGTAGGCAT 47428 || |||| ||||||||||| ||||| Sbjct 8062943 ATCTGAGATGTTGATGCTGTTGGCAT 8062968 Score = 105 bits (116), Expect = 8e-18 Identities = 175/253 (69%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 48412 CAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTAC 48471 |||||||||||||| ||||| ||||| | || || | ||| | | || ||| Sbjct 8065757 CAATACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTGCGAATGTTAT 8065816 Query 48472 TAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531 || | || ||||| || || | |||||||| | ||||| ||| || |||| Sbjct 8065817 GAACATTTAGTCCAATACCCCCGGCATTCTTAGATATAACTGCACATTCTTTTAGCGTAT 8065876 Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCG 48591 | ||||| |||||||||||||| ||| ||||| | | ||||||||||| || | || | Sbjct 8065877 CGTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTCGAAAGCTGTG 8065936 Query 48592 GATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATA 48651 | | | ||| || | ||||| | ||| || || ||||| ||||||| || || || | Sbjct 8065937 GTTTAGGAGTCCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCACTTTTCAGACA 8065996 Query 48652 ACAATTTATATGT 48664 || ||||| || Sbjct 8065997 TTAAGTTATACGT 8066009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562102581671400