Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 178 1e-38 seq789 141 7e-28 seq40 95.1 1e-13 seq34 86.0 5e-11 >seq1 Length=65476681 Score = 178 bits (196), Expect = 1e-38 Identities = 401/597 (67%), Gaps = 7/597 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||| | || || |||||| ||||||||||||| || |||||||| Sbjct 47704547 GCCATTGGAATCGATCTTGGTACAACATATTCGTGTGTTGGTGTTTTCCAGCATGGTAAA 47704606 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || ||||||||||| || ||||||||||| || || |||||| | ||||| Sbjct 47704607 GTGGAGATAATTGCCAATGACCAGGGTAACAGAACGACACCGAGTTATGTGGCGTTCACA 47704666 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || |||| | |||| ||||||||| ||| || | |||| | || || || ||| Sbjct 47704667 GACTCTGAGCGTTTAATTGGTGATGGAGCGAAGAACCAAGTGGCGATGAACCCAACAAAT 47704726 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | |||||||| || ||| |||| || | | || ||||| | | || ||| Sbjct 47704727 ACAGTGTTTGATGCGAAGCGTCTAATCGGTCGTCGGTTCGATGATCCATCAGTGCAGAGT 47704786 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 ||||||||||||||||| ||| | | | | || ||| || | | ||| | | Sbjct 47704787 GATATGAAGCATTGGCCATTCGAGGTGACTCAAGTCGGTGGGAAGCTGAAGATTTGTGTT 47704846 Query 550292 ACTCATGAAGGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 || |||| | | ||| | ||||| | || | ||||| || ||||| || | Sbjct 47704847 GAGTAT-AAGGGTGAGAAAAAGATGTTTTCCGCTGAGGAGATTTCGTCAATGGTGTTGAC 47704905 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATAA 550409 ||| ||||| | | | | || |||| || || || | || || || |||| Sbjct 47704906 GAAGATGAAGGAGGTTG-CTGAAAGTTATTTGGGCAGGACGGTGAGTGACGCTGTTATAA 47704964 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || || || || || |||||| ||||||||||| || |||||||| || ||| | Sbjct 47704965 CGGTTCCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGCTATAG 47705024 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 |||| |||||||| | | || || || || || || ||||| ||| |||| ||||| Sbjct 47705025 CTGGTCTTAATGTGTTGAGAATCATTAACGAGCCGACAGCTGCGGCAATTGCCTATGGTT 47705084 Query 550530 TTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT---GTGGAGGTA 550583 | || || | || | || | |||||| | || ||||||| |||| |||| Sbjct 47705085 TGGACAAGAAGGTTGGTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTA 47705141 Score = 174 bits (192), Expect = 1e-37 Identities = 378/560 (68%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 550028 GTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACT 550087 |||||||| | ||| || ||||||||||||||| |||||||| |||||||| | | Sbjct 49952232 GTTGGTGTATTTCAAGGAGGCCGAGTTGAAATTATTGCGAATGATCAGGGTAACAGGATT 49952291 Query 550088 ACTCCATCTTATGTTTCTTTCAC---GGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 ||||| || ||||| | ||||| |||| || | | |||| ||||| || ||| Sbjct 49952292 ACTCCCTCATATGTGGCATTCACTCCGGAAGGCGAGCGACTGATTGGAGATGCTGCTAAA 49952351 Query 550145 TATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGA 550204 | || || ||||| || || |||| || | || | | ||||||||| Sbjct 49952352 AACCAGCTGACATCGAATCCGGAAAACACAGTTTTCGACGTCAAGAGACTTATTGGAAGA 49952411 Query 550205 AGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAAT 550264 | || |||| || ||||| ||| || || | |||| ||||| |||||||| Sbjct 49952412 AAGTTCGATGAATCAACTGTACAGAATGACATAACTCATTTCCCTTTTTCCGTTGTTAAT 49952471 Query 550265 GTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGT--TAAACAATTTT-CA 550321 || || ||| | |||| | || | ||||| | | || | |||| | Sbjct 49952472 AAAAAGAACAAGCCGTATGTCGAAGTT---CACGTTGGATCAGAAGTCAAGACTTTTGCC 49952528 Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 || || | || || ||||||| ||| ||| |||||| | || |||| | || Sbjct 49952529 CCGGAGGAGATCTCTGCTATGGTGTTAGGGAAGATGAAAGAGTTTGCTGAAGCTTATCTT 49952588 Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 || || | ||||| ||||||| | ||||| ||||| |||||||| ||| |||| || Sbjct 49952589 GGCAAAAAGGTTACTCATGCAGTTGTTACTGTTCCAGCTTATTTTAACGACGCACAGCGC 49952648 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 ||||| || ||||||||||| |||||||| | ||| | || || ||||| |||||| Sbjct 49952649 CAAGCAACCAAAGATGCTGGTACAATTGCTGGTTTGAATATACTCCGGATTATTAATGAA 49952708 Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTA 550561 || |||||||||||| |||| || || || ||||| | ||| | |||| ||| | Sbjct 49952709 CCAACTGCTGCTGCAATTGCTTACGGTCTAGATAAGAAAGATGGT-GAGAA--AAATATT 49952765 Query 550562 CTCATCTTTGATTGTGGAGG 550581 || || |||||| |||||| Sbjct 49952766 CTGATATTTGATCTTGGAGG 49952785 Score = 102 bits (112), Expect = 7e-16 Identities = 303/462 (66%), Gaps = 13/462 (3%) Strand=Plus/Plus Query 552115 ATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTT 552174 |||||||| | || |||||||| ||||| ||| ||||| ||| ||| | || | Sbjct 49953175 ATGAAATTATTCTAGTTGGTGGTTCTACTCAAATCCCTAAGGTTCAAGAACTTCTACGAA 49953234 Query 552175 CTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATG 552234 || ||| | ||| || | || | | |||||||||||||| || ||||| || | Sbjct 49953235 GTTTCTTCGAA---AAAGAACTTAACACAGGAGTTAATCCAGATGAAGCAGTTGCATACG 49953291 Query 552235 GTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAA-ACTACAAAATATT 552293 |||| || |||| | | || || ||| || || || ||| | || Sbjct 49953292 GTGCAGCTGTTCAGGGTGGCGTTATTGGTGG------TGTGGAGAACACTGGAGGCG-TT 49953344 Query 552294 GTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACT 552353 || ||| ||||||| || | || | ||| | ||||| ||||| ||| | ||||| Sbjct 49953345 GTGCTTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTTGGTGGTGTCATGACG 49953404 Query 552354 AATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTAT 552413 || ||||| |||||||| |||||| || || || | |||||||||| | Sbjct 49953405 AAACTTATTCCAAGAAATACAGTTATTCCAACGAAGAAGTCGCAGATATTTTCTACAGCT 49953464 Query 552414 TCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAA 552473 | || || || | |||| ||||| || | ||||| || ||| || | || ||| Sbjct 49953465 GCCGACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCTATGAC-AAA 49953523 Query 552474 GAT-AATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGT 552532 | | ||| || ||||| | ||| | | |||||||||||| || | ||||||||| Sbjct 49953524 GTTCAATCATTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTTCGTGGAGT 49953583 Query 552533 ACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAAT 552574 || |||||||| || || || || || || | ||| || || Sbjct 49953584 CCCACAAATTGAGGTGACATTTGAGATTGACGTCAACGGCAT 49953625 Score = 100 bits (110), Expect = 2e-15 Identities = 150/210 (71%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 563267 CAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTC 563324 |||| ||||| || ||| | | ||| ||||||||||||| | || | |||||| Sbjct 54270764 CAAG-TGAAGAGTGGACTCTTTCTGG--ATATTGTAATCAGACAATGTGCGACCATCTTC 54270708 Query 563325 AAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTG 563384 || || || || ||||| || || | ||| |||||||| ||||| |||||||||||||| Sbjct 54270707 TAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGGAATCCCTTCTTTATCTTG 54270648 Query 563385 AATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTT 563444 || || || || |||||| || ||| | | | ||| | ||| | ||||| Sbjct 54270647 GATCTTGGCCTTCACATTCTCAATGGTGTCACTCGGCTCAACTTCCAAAGTGATCGTTTT 54270588 Query 563445 ACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||||| | ||||| ||||| |||||||| Sbjct 54270587 ACCAGTTAATGTTTTCACGAATATTTGCAT 54270558 Score = 86.0 bits (94), Expect = 5e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 |||||| || || || || ||||| || || | ||| |||||||| ||||| |||||||| Sbjct 54270941 ATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGGAATCCCTTCTTT 54270882 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAAC 563438 |||||| || || || || |||||| || ||| | | | ||| | ||| | Sbjct 54270881 ATCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTCGGCTCAACTTCCAAAGTGAT 54270822 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||||||||||| | || || || ||||| |||||| Sbjct 54270821 CGTTTTACCAGTCAATGTCTTCACAAAAATCTGCATA 54270785 >seq789 Length=29961 Score = 141 bits (156), Expect = 7e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || |||||||| || || ||| || |||||||| || | ||||||| | Sbjct 604 AGACGAAGGACAAGATGGAGTGTTGATTCCTTCTGTATATTGTAGTCGGAAAGAGTTCGT 663 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| |||||||| || |||||||| | | ||| || || || || || |||||| Sbjct 664 CCATCTTCCAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGGTCTGGTGGGATGCCTTCT 723 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436 |||||||| ||||| || ||||| || |||||||||| | | ||| ||||| Sbjct 724 TTATCTTGGATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGAGTT 783 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | |||||| |||||||| || || |||||||| ||||| Sbjct 784 ATAGTTTTTCCAGTAAGTGTCTTCACGAAAATCTGCAT 821 >seq40 Length=9743550 Score = 95.1 bits (104), Expect = 1e-13 Identities = 128/177 (72%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 368836 CAAATACATTATCCATTTGATAACGCAAAATACTTTGATAATGATAAAGATTATGTGGCT 368895 || ||||||||||||||||| || |||| | || | | | ||| || || Sbjct 6429708 CAGATACATTATCCATTTGAGAATACAAA----TGTGTT--TCAAGAAGGTTTCCCAGCA 6429655 Query 368896 GATTTTGTAACAGAATCAATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTA 368955 ||||| | | ||| ||||||||||||||||||||||||||||| |||| |||||| Sbjct 6429654 GATTTCATCGCTGAAGGTATTGATCAAACACGTGGTTGGTTTTATACATTATTGGTATTA 6429595 Query 368956 TCCACAGCTATTTTCGATAAACCGGCTTTTAAAAATGTAATAGTAACTGGTATTGTT 369012 ||||| || | |||||| ||||| | ||| ||| |||| || | ||| || ||| Sbjct 6429594 TCCACTGCATTATTCGATCAACCGCCATTTCGTAATTTAATTGTTAATGGAATAGTT 6429538 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 368562 TAATTGGCTCCAAAATTCAGTTGATTGGTGTATTTCAAGAAGTAGGTTTTGGGGAACTCC 368621 ||||||||| | || || ||||||| | | || |||| | | || ||||| || || Sbjct 6431584 TAATTGGCTACGTGATGCACGTGATTGGGCTGTGTCTAGAAATCGTTTCTGGGGTACACC 6431525 Query 368622 AATTCCAGTATGGAAATCTGATGATGGTGAAGAAATTGTTTGTATAGGTTCAATTAAAGA 368681 ||| ||| |||||| | ||||||| |||||| | |||||||| ||||| ||| ||| Sbjct 6431524 AATACCAATATGGACAAGTGATGATATGGAAGAAGTGGTTTGTATTGGTTCTATTGGAGA 6431465 Query 368682 ATTGCAAGAATTATCTGGTGT 368702 |||| || ||||||||||| Sbjct 6431464 ATTGAAACTGTTATCTGGTGT 6431444 >seq34 Length=32115376 Score = 86.0 bits (94), Expect = 5e-11 Identities = 153/223 (69%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 393937 AAAATTAGCTCCTGGATATACACGACGTCCATTTTTTACTAATTGTGTTAAATATTCAAT 393996 ||| ||||| || ||||| | | |||||| | ||||| | | |||| || || Sbjct 10002240 AAACTTAGCACCAGGATAGA---GGGTTCCATTCTGTACTAGCTTTTGCAAATGATCTAT 10002296 Query 393997 GTTATGTTTTGTCACAATTTCATCAAATGTTAAATTCATTGCAATAATTTGTGGTAGTCC 394056 |||| || || || || ||| | | |||| ||| || || || |||| | || Sbjct 10002297 GTTAAATTGAGTAACTATCTCAGGATAAGTTAGATTTTGAGCTATTGTTCGTGGGACGCC 10002356 Query 394057 CACTTCATTAAGAGCAATATTTGGATCCGAGGTAATAACTGTACGACCTGACATATCCAC 394116 ||||| || | | || || ||||| | || ||||| |||||| |||| | || || Sbjct 10002357 CACTTGATCTAAATTAAGGTTGGGATCGGCTGTGATAACAGTACGAGCTGAGAAGTCAAC 10002416 Query 394117 ACGTTTTCCCATAAGATTTCCACGAATTCTACCTTCTTTACCT 394159 |||||||||||||||||| || ||||| | || |||||||| Sbjct 10002417 ACGTTTTCCCATAAGATTACCTCGAATACGGCCAGCTTTACCT 10002459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029249197208650