Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq862 255 7e-63 >seq862 Length=148971 Score = 255 bits (282), Expect = 7e-63 Identities = 570/854 (67%), Gaps = 50/854 (6%) Strand=Plus/Minus Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946 ||||||||| |||||||| | || || || || ||||||||||| | |||||| ||||| Sbjct 30586 TTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCTTTCCTTCGATTGATATGTTTTC 30527 Query 36947 CATAAAATCAAATGGATTAGATGTATTATATAT-----------AGTACTACAT-GATAA 36994 ||| || ||||| ||||| | || ||| || | | || || || | Sbjct 30526 CATGAAGTCAAAAGGATTGTCAGAATGATACATCTAAAAGGAAAACAATTAAATAGAAGA 30467 Query 36995 TT------CCTT------------------CAGAAGCCTATCCGCAACAAATTCTATGTA 37030 || |||| ||| ||||| || || | |||||| ||||| Sbjct 30466 TTTGCAAACCTTTTCATAACCAAGTTCAACCAGTAGCCTGTCAGCGATAAATTCAATGTA 30407 Query 37031 TTTACACATTAGTTCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAA 37090 | |||||| | || | || || ||||||| | ||||| | || || | | ||| Sbjct 30406 CTGACACATCAATTTGCAATTCATCCCAATTAAGCTGACTGGTAGGGCTTC--GGATAAA 30349 Query 37091 TAGT--TTTTCTATTATTACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGG 37148 | | | |||||| | || || ||| | | ||| ||| | ||||| | || Sbjct 30348 AACTCCTGTTCTATCAGAACCGCCTCTCTTATTATTGACTCAACACGTTCTT---TGGGA 30292 Query 37149 GGATATTTTA-AATAT--TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCT 37205 || | ||| | ||||| |||||||||| ||| || ||||||||||||| ||||| ||| Sbjct 30291 GGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCT 30232 Query 37206 CTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAA 37265 ||||| || |||||||| ||| | | ||| ||||| | ||||| ||| |||| ||| Sbjct 30231 CTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAG 30172 Query 37266 AATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGA 37325 ||||| |||||||| |||||||| || | |||||| ||||||||||| || || | Sbjct 30171 AATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAACTAAG 30112 Query 37326 CGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAAT 37385 ||| | ||||| || || ||||| |||||| | | || ||| | |||||| Sbjct 30111 CGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATCTAATGCCCACTGAGCCTTTTTA 30052 Query 37386 TTAACACA--TTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTG 37443 |||||| || | ||| || || || || |||||||||| |||||| | ||| Sbjct 30051 GCAACACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTTTCTTTAGAGTCTT 29994 Query 37444 TTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCT 37503 | || || |||||||| | |||| |||||||||||||||||||| || |||||||||| Sbjct 29993 TGATGTATGTATCAATCAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCT 29934 Query 37504 GAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTA 37563 | | ||||| ||||| | | | || | | || || || | || | | | Sbjct 29933 GCATCCCATAGAAACAACGAACCTCTGGAATCTGGACTTCTTGGCTGAAGCGTTCCAGGA 29874 Query 37564 AGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAAT 37623 ||| || || || || ||||| || |||||||| || | || || ||| |||| Sbjct 29873 GGTTCTCGAGGACAATTCCGTCACTCGCCGCAAAGAAGGCTAACACGTAGGATATGAAAT 29814 Query 37624 GTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCAT 37683 | | ||| || | ||| | ||||| | | |||||| |||||||| || || | Sbjct 29813 GACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAAATCTTTGGATAAATCGACCTCTT 29754 Query 37684 CAACGGTCCAAAAA 37697 | || ||||||||| Sbjct 29753 CCACAGTCCAAAAA 29740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592310247495400