Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1 143 2e-29 seq789 125 6e-24 seq14 116 3e-21 >seq1 Length=65476681 Score = 143 bits (158), Expect = 2e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || ||||| || || ||||| || ||||||||||| | | || | | Sbjct 54270773 ACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTGCGACC 54270714 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | |||||||| ||||| |||| ||| |||||||| || ||||| |||||||| Sbjct 54270713 ATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGGAATCCCTTCTTT 54270654 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||| || || || ||| | || | |||||| || || ||||| | ||||| Sbjct 54270653 ATCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTCGGCTCAACTTCCAAAGTGAT 54270594 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 |||||| || ||||| ||||| || ||||| ||||| || Sbjct 54270593 CGTTTTACCAGTTAATGTTTTCACGAATATTTGCATCGT 54270555 Score = 122 bits (134), Expect = 7e-23 Identities = 158/217 (73%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTT-TTGTATATTGTAATCGGCGATAGTTCTGG 101312 ||| || || || ||||| || || ||||| ||| |||| |||| | | || | Sbjct 54271002 ACGCAACACCAAGTGAAGAGTGGACTCTTTCTTGGATATGTAAATCAGACAATGTGCGAC 54270943 Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| || | |||||||| ||||| |||| ||| |||||||| || ||||| ||||||| Sbjct 54270942 CATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGGAATCCCTTCTT 54270883 Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 ||||||| || || || ||| | || | |||||| || || ||||| | ||||| Sbjct 54270882 TATCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTCGGCTCAACTTCCAAAGTGA 54270823 Query 101433 CCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||| || || || || || ||||| |||||||| Sbjct 54270822 TCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 54270786 >seq789 Length=29961 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || ||||| || ||||||||||| |||| | ||||| |||| |||| ||| Sbjct 618 ATGGAGTGTTGATTCCTTCTGTATATTGTAGTCGGAAAGAGTTCGTCCATCTTCCAGTTG 677 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || ||||| || ||||| ||||| || || || ||||||||||||||||| ||||| Sbjct 678 TTTGCCAGCAAAAATTAAACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGGATTTT 737 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || ||||| || |||| | || ||||| ||||| | ||||| || || Sbjct 738 CGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGAGTTATAGTTTTTCCAGT 797 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 798 AAGTGTCTTCACGAAAATCTGCAT 821 >seq14 Length=34464480 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | || ||| | || | ||| || || || ||||| || || ||||| || | Sbjct 20621854 TTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAG 20621913 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | |||| ||||| |||||||| || || |||||||| ||||| || || | Sbjct 20621914 ACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAG 20621973 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| |||||||| ||||| || || ||| ||| | || | ||| ||| | |||| Sbjct 20621974 GAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCA 20622033 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | || | || || || || || || ||||| ||||||||||| Sbjct 20622034 CCTCCAATGTTATAGTCTTCCCTGTCAATGTCTTTACGAATATCTGCAT 20622082 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | || ||| | || | ||| || || || ||||| || || ||||| || | Sbjct 20638546 TTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAG 20638605 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | |||| ||||| |||||||| || || |||||||| ||||| || || | Sbjct 20638606 ACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAG 20638665 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| |||||||| ||||| || || ||| ||| | || | ||| ||| | |||| Sbjct 20638666 GAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCA 20638725 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | || | || || || || || || ||||| ||||||||||| Sbjct 20638726 CCTCCAATGTTATAGTCTTCCCTGTCAATGTCTTTACGAATATCTGCAT 20638774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396274125765945