Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq789 134 2e-26 seq1 109 1e-18 seq14 105 1e-17 >seq789 Length=29961 Score = 134 bits (148), Expect = 2e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 193130 TATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTC 193189 ||||||||| | | ||||| || ||||| | ||| | || || ||||| ||||| Sbjct 591 TATACCACCACGAAGACGAAGGACAAGATGGAGTGTTGATTCCTTCTGTATATTGTAGTC 650 Query 193190 GGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGG 193249 ||| | |||| ||| || | |||||| || ||||||||||| | ||||| || || Sbjct 651 GGAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGGTCTGG 710 Query 193250 AGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTC 193309 || || |||||||||||||| ||||| | || | | || ||||| | || ||| Sbjct 711 TGGGATGCCTTCTTTATCTTGGATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTC 770 Query 193310 AACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||||||||||||||||||| || || || || || || || || ||||| || Sbjct 771 AACTTCTAGAGTTATAGTTTTTCCAGTAAGTGTCTTCACGAAAATCTGCATCTT 824 >seq1 Length=65476681 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || | |||| || | || | |||||| ||||| || || Sbjct 54270787 ATACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCA 54270728 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | | ||| |||| || || || ||||| || | | ||||||||||| Sbjct 54270727 GACAATGTGCGACCATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGT 54270668 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||||||||| || |||| || | ||| ||| || || | |||| Sbjct 54270667 GGAATCCCTTCTTTATCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTCGGCTCA 54270608 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | ||| || |||||||| |||| ||||| || ||||||||||| Sbjct 54270607 ACTTCCAAAGTGATCGTTTTACCAGTTAATGTTTTCACGAATATTTGCAT 54270558 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| |||| || || || ||||| || | | ||||||||||| || || |||||||| Sbjct 54270941 ATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGGAATCCCTTCTTT 54270882 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||| || |||| || | ||| ||| || || | ||||||||| | ||| || Sbjct 54270881 ATCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTCGGCTCAACTTCCAAAGTGAT 54270822 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || | || || ||||| || ||||| Sbjct 54270821 CGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 54270786 >seq14 Length=34464480 Score = 105 bits (116), Expect = 1e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || ||||||| || | |||||| || || ||||| || | || | | Sbjct 20621640 CGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA 20621699 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || || || || || || || || | ||||| |||||||| || |||||||| Sbjct 20621700 TCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTG 20621759 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | ||| | ||| ||||||||| || ||| || || | || || Sbjct 20621760 TCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATC 20621819 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || | ||| || ||||||||||||||| Sbjct 20621820 GTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20621855 Score = 105 bits (116), Expect = 1e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || ||||||| || | |||||| || || ||||| || | || | | Sbjct 20637648 CGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA 20637707 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || || || || || || || || | ||||| |||||||| || |||||||| Sbjct 20637708 TCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTG 20637767 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | ||| | ||| ||||||||| || ||| || || | || || Sbjct 20637768 TCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATC 20637827 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || | ||| || ||||||||||||||| Sbjct 20637828 GTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20637863 Score = 105 bits (116), Expect = 1e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || ||||||| || | |||||| || || ||||| || | || | | Sbjct 20637876 CGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA 20637935 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || || || || || || || || | ||||| |||||||| || |||||||| Sbjct 20637936 TCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTG 20637995 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | ||| | ||| ||||||||| || ||| || || | || || Sbjct 20637996 TCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATC 20638055 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || | ||| || ||||||||||||||| Sbjct 20638056 GTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20638091 Score = 102 bits (112), Expect = 1e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || ||||||| || | |||||| || || ||||| || | || | | Sbjct 20638104 CGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA 20638163 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || || || || || || || || | ||||| |||||||| || |||||||| Sbjct 20638164 TCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTG 20638223 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | ||| | ||| ||||||||| || ||| || || | || || Sbjct 20638224 TCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATC 20638283 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || | || || ||||||||||||||| Sbjct 20638284 GTCTTACCAGTCAATGTCTTCACAAATATTTGCATT 20638319 Score = 102 bits (112), Expect = 1e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || ||||||| || | |||||| || || ||||| || | || | | Sbjct 20638332 CGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA 20638391 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || || || || || || || || | ||||| |||||||| || |||||||| Sbjct 20638392 TCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTG 20638451 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | ||| | ||| ||||||||| || ||| || || | || || Sbjct 20638452 TCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATC 20638511 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || | || || ||||||||||||||| Sbjct 20638512 GTCTTACCAGTCAATGTCTTCACAAATATTTGCATT 20638547 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| || || | ||| || || || ||||| || | || | ||| || Sbjct 20621418 ACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 20621477 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 || || || || || || || || | ||||| |||||||| || |||||||| ||||| Sbjct 20621478 AACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGG 20621537 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || || | ||| | ||| ||||||||| || ||| || || | || || || ||| Sbjct 20621538 ATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTA 20621597 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || | ||| || ||||||||||||||| Sbjct 20621598 CCAGTCAACGTCTTCACAAATATTTGCATT 20621627 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| || || | ||| || || || ||||| || | || | ||| || Sbjct 20637426 ACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 20637485 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 || || || || || || || || | ||||| |||||||| || |||||||| ||||| Sbjct 20637486 AACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGG 20637545 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || || | ||| | ||| ||||||||| || ||| || || | || || || ||| Sbjct 20637546 ATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTA 20637605 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || | ||| || ||||||||||||||| Sbjct 20637606 CCAGTCAACGTCTTCACAAATATTTGCATT 20637635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899644447573200