Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq789 129 1e-24 seq1 127 4e-24 seq14 98.7 2e-15 >seq789 Length=29961 Score = 129 bits (142), Expect = 1e-24 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||| | ||| || | || | ||| | || | || || ||||| || Sbjct 589 ATTATACCACCACGAAGACGAAGGACAAGATGGAGTGTTGATTCCTTCTGTATATTGTAG 648 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || | || |||| | || |||| |||||| |||||||||||||| | |||||||| Sbjct 649 TCGGAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGGTCT 708 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || |||||||||||||| ||||| || || ||| ||||| | | Sbjct 709 GGTGGGATGCCTTCTTTATCTTGGATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGC 768 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||||||||| || ||||| ||||| | ||| || | ||| |||||||| || Sbjct 769 TCAACTTCTAGAGTTATAGTTTTTCCAGTAAGTGTCTTCACGAAAATCTGCATCTT 824 >seq1 Length=65476681 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || || || || || | ||| | |||||| ||||| ||||| Sbjct 54270787 ATACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCA 54270728 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || || | || ||||||||||| || | | ||||| |||||| Sbjct 54270727 GACAATGTGCGACCATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGT 54270668 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| || || || ||||| || || || || || Sbjct 54270667 GGAATCCCTTCTTTATCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTCGGCTCA 54270608 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| || |||||||||||||||||||| | |||||| ||||| Sbjct 54270607 ACTTCCAAAGTGATCGTTTTACCAGTTAATGTTTTCACGAATATTTGCAT 54270558 Score = 98.7 bits (108), Expect = 2e-15 Identities = 161/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAA-ATATTATAATC 171898 |||||||| | ||| || || || || || | ||| | |||||| |||| |||| Sbjct 54271016 ATACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTTGGATATGTAAATC 54270957 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || || | || | || || | || ||||||||||| || | | ||||| ||||| Sbjct 54270956 AGACAATGTGCGACCATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGG 54270897 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| || |||||||||||||| || || || ||||| || || || || || Sbjct 54270896 TGGAATCCCTTCTTTATCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTCGGCTC 54270837 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| || ||||||||||| ||||| || | || |||||||| Sbjct 54270836 AACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 54270786 >seq14 Length=34464480 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 171852 AGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGT 171911 || ||||| || | |||||| || | ||| || || || || || || | || ||| Sbjct 20621409 AGGCGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGT 20621468 Query 171912 TCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCT 171971 | || ||||| || |||||||| || || || | ||||||||||| || || |||||| Sbjct 20621469 CCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCT 20621528 Query 171972 TTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTA 172031 || ||||| || || ||| ||||| |||||||| | || || || | || Sbjct 20621529 TTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTG 20621588 Query 172032 ATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || |||||||| || || || | ||||| |||||| Sbjct 20621589 ATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20621627 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 171852 AGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGT 171911 || ||||| || | |||||| || | ||| || || || || || || | || ||| Sbjct 20637417 AGGCGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGT 20637476 Query 171912 TCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCT 171971 | || ||||| || |||||||| || || || | ||||||||||| || || |||||| Sbjct 20637477 CCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCT 20637536 Query 171972 TTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTA 172031 || ||||| || || ||| ||||| |||||||| | || || || | || Sbjct 20637537 TTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTG 20637596 Query 172032 ATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || |||||||| || || || | ||||| |||||| Sbjct 20637597 ATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20637635 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || | ||| | ||| | |||||| || || || || Sbjct 20621853 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCA 20621912 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| | || ||||| || |||||||| || || || | ||||||||||| Sbjct 20621913 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGA 20621972 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || ||| ||||| |||||||| | || Sbjct 20621973 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCC 20622032 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | || || || || || || ||||| || | ||||||||||||| Sbjct 20622033 ACCTCCAATGTTATAGTCTTCCCTGTCAATGTCTTTACGAATATCTGCATT 20622083 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || | ||| | ||| | |||||| || || || || Sbjct 20638089 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCA 20638148 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| | || ||||| || |||||||| || || || | ||||||||||| Sbjct 20638149 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGA 20638208 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || ||| ||||| |||||||| | || Sbjct 20638209 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCC 20638268 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | || || || |||||||| ||||| || | ||||| |||||| Sbjct 20638269 ACCTCCAACGTGATCGTCTTACCAGTCAATGTCTTCACAAATATTTGCATT 20638319 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || | ||| | ||| | |||||| || || || || Sbjct 20638317 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCA 20638376 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| | || ||||| || |||||||| || || || | ||||||||||| Sbjct 20638377 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGA 20638436 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || ||| ||||| |||||||| | || Sbjct 20638437 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCC 20638496 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | || || || |||||||| ||||| || | ||||| |||||| Sbjct 20638497 ACCTCCAACGTGATCGTCTTACCAGTCAATGTCTTCACAAATATTTGCATT 20638547 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || | ||| | ||| | |||||| || || || || Sbjct 20638545 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCA 20638604 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| | || ||||| || |||||||| || || || | ||||||||||| Sbjct 20638605 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGA 20638664 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || ||| ||||| |||||||| | || Sbjct 20638665 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCC 20638724 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | || || || || || || ||||| || | ||||||||||||| Sbjct 20638725 ACCTCCAATGTTATAGTCTTCCCTGTCAATGTCTTTACGAATATCTGCATT 20638775 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || | ||| | ||| | |||||| || || || || Sbjct 20621625 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCA 20621684 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| | || ||||| || |||||||| || || || | ||||||||||| Sbjct 20621685 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGA 20621744 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || ||| ||||| |||||||| | || Sbjct 20621745 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCC 20621804 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | || || || |||||||| || || || | ||||| |||||| Sbjct 20621805 ACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20621855 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || | ||| | ||| | |||||| || || || || Sbjct 20637633 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCA 20637692 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| | || ||||| || |||||||| || || || | ||||||||||| Sbjct 20637693 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGA 20637752 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || ||| ||||| |||||||| | || Sbjct 20637753 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCC 20637812 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | || || || |||||||| || || || | ||||| |||||| Sbjct 20637813 ACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20637863 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || | ||| | ||| | |||||| || || || || Sbjct 20637861 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCA 20637920 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| | || ||||| || |||||||| || || || | ||||||||||| Sbjct 20637921 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGA 20637980 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || ||| ||||| |||||||| | || Sbjct 20637981 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCC 20638040 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | || || || |||||||| || || || | ||||| |||||| Sbjct 20638041 ACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20638091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905125986933000