Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq42 89.7 2e-12 seq34 87.8 5e-12 >seq42 Length=59508269 Score = 89.7 bits (98), Expect = 2e-12 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 |||||||||||||| |||||||| || ||||| || || || || ||| | | ||| ||| Sbjct 21232341 ATAGTCATACGACTAGGAATAGCGTGTGGATTAATAATAATATCTGGTGTAATTCCTTCA 21232282 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCCGTG 251963 ||||| ||||||| ||| | | |||| | ||||| ||| || |||||||| || Sbjct 21232281 CATGTGAACGGCATAT-CTTCTTGACGATAACGAATTCCACAAGTACCTTTTTGTCCATG 21232223 Query 251964 ACGAGAACTGAACTTATCACCAA 251986 ||| | ||| |||||||||| Sbjct 21232222 TCGACTAGCGAATTTATCACCAA 21232200 Score = 86.0 bits (94), Expect = 2e-11 Identities = 156/226 (69%), Gaps = 7/226 (3%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC--GCAATT 289086 ||||| ||| |||||||||||||| || | | ||| |||| |||||||| ||| Sbjct 17121867 ACCAATAGCGTCAATTTCGTCAATAAACAATATACAGGGAG--CTTTGTCTCGTGCAGAG 17121924 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||||| | || | ||| | | ||| | |||||| |||| |||| ||||||| Sbjct 17121925 GCAAACATATCGCGTACTCTTTTCGGTCCTACACCAACGAACATCTCTAAAAATTCACTC 17121984 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 |||| || || |||| ||||| ||||| || || ||| | |||| |||||| Sbjct 17121985 CCGGAAACGGAAAGAAATGGAACATTCGCTTCTCCAGCAGTCGCCTTAGCCAAAAGTGTT 17122044 Query 289207 TTACCTGTTCCAGGTGGTCCCT---CTAATAGAACTCCCTTTGGTA 289249 || || |||||||| || |||| ||| ||||| || ||| || Sbjct 17122045 TTTCCAGTTCCAGGAGGACCCTAAATTAAGAGAACACCTGTTGTTA 17122090 >seq34 Length=32115376 Score = 87.8 bits (96), Expect = 5e-12 Identities = 190/282 (67%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || ||| ||| || ||||||| ||||||| || |||| |||||| Sbjct 10000851 ATTTCTAACAGTCCCATCGTATTTGATCATAACTGATTCCATAGCTTTAATTAGACGACG 10000910 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||| || |||||| | ||||| || || || || || | || | |||||||| Sbjct 10000911 TTGAATGTACCCAGTTTCGGCGGTTTTGACTGCAGTGTCTATCAAGCCTTCTCGACCACC 10000970 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 |||||| ||||| || | || ||| || || ||| ||||| | |||||||| Sbjct 10000971 CATAGCGTGGAAAAAAAATTCAGTGGGTGTTAAACCAGCAAGGTAGGAGTTTTCAACGAA 10001030 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTG-GTAAAGTGTGGCAGGGTCCTGTTCTCAT 302776 ||||| | ||| || || || | |||| |||| ||||| || || | || | Sbjct 10001031 GCCACGAGACTCAGGACCATAATC-ATCTTGAATAAAATGTGGTAGCGTACGGTGACGAA 10001089 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818 | ||| | || || | || || |||||||| || || |||| Sbjct 10001090 AACCGAAGGGAATTCTTTTACCTTCAACGTTTTGTTGACCCA 10001131 Score = 86.0 bits (94), Expect = 2e-11 Identities = 140/197 (71%), Gaps = 10/197 (5%) Strand=Plus/Plus Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT--TTAGAAATTTGAGCGCAT 156221 ||||| ||||||| || |||||||||||| || | ||| ||||| || || ||| Sbjct 8065806 GCGAATGTTATGAACATTTAGTCCAATACCCCCGG--CATTCTTAGATATAACTGCACAT 8065863 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT--TGAT-AGTAGATAG 156278 || |||| |||| | |||| ||||| ||| ||| |||| ||| |||| || | | | Sbjct 8065864 TCTTTTAGCGTATCGTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAA 8065923 Query 156279 CACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATA 156338 | |||| | || ||| || || |||||||| || ||||| |||| ||||| || Sbjct 8065924 CTCGAA---AGCTGTGGTTTAGGAGTCCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTA 8065980 Query 156339 AAATACTTATTAGACAT 156355 || |||| | |||||| Sbjct 8065981 AACCACTTTTCAGACAT 8065997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471800910968245