Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 seq789 116 3e-21 seq14 114 1e-20 >seq1 Length=65476681 Score = 131 bits (144), Expect = 2e-25 Identities = 164/222 (74%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 24700 TACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGC 24759 ||||||||| || || | ||||| |||| |||||||| || || | ||||| || | Sbjct 54270554 TACGATGCAAATATTCGTGAAAACATTAACTGGTAAAACGATCACTTTGGAAGTTGAGCC 54270613 Query 24760 CACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 | ||||| | || | || || ||||||||||| |||||||| || || || || Sbjct 54270614 GAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAAGATAAAGAAGGGATTCCACCTGA 54270673 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGA 24876 |||||||||| |||||||||| || || ||||| || ||| ||| ||| |||| || Sbjct 54270674 TCAACAACGTCTGATCTTTGCTGGTAAGCAGCTAGAAGATGGTCG---CACATTGTCTGA 54270730 Query 24877 TTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || || || || || || || || |||||||||||||| Sbjct 54270731 TTACAATATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCG 54270772 Score = 113 bits (124), Expect = 4e-20 Identities = 159/219 (73%), Gaps = 7/219 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || |||||||| || || | ||||| || | | Sbjct 54270786 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTTGAGCCGAGT 54270845 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||| |||||||| || || || |||||| Sbjct 54270846 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGATAAAGAAGGGATTCCACCTGATCAA 54270905 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTAT 24880 |||||| |||||||||| || || ||||| || ||| ||| ||| |||| |||| Sbjct 54270906 CAACGTCTGATCTTTGCTGGTAAGCAGCTAGAAGATGGTCG---CACATTGTCTGATTTA 54270962 Query 24881 AACATTCAA-AAGGAATCGACACTACACTTGGTGTTGCG 24918 | || ||| || || || || || |||||||||||||| Sbjct 54270963 CATATCCAAGAAAGAGTCCACTCTTCACTTGGTGTTGCG 54271001 >seq789 Length=29961 Score = 116 bits (128), Expect = 3e-21 Identities = 152/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || || |||||||| || || ||||| || | | Sbjct 822 GATGCAGATTTTCGTGAAGACACTTACTGGAAAAACTATAACTCTAGAAGTTGAGCCTGC 763 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| ||||| | || || || |||||||| |||||||| || || || || || Sbjct 762 TGATACAATAGAAGCAGTTAAGGCGAAAATCCAAGATAAAGAAGGCATCCCACCAGACCA 703 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||||| || ||||| || ||||| ||||| ||| ||| | || || || || Sbjct 702 ACAACGTTTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTACAA 643 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 || || |||||||| ||||| || |||| Sbjct 642 TATACAGAAGGAATCAACACTCCATCTTG 614 >seq14 Length=34464480 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || ||| | || ||||| || || ||| | || || || | | Sbjct 20621626 ATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGT 20621567 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||||||||||||||| || ||||| || ||| Sbjct 20621566 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20621507 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||| || || || ||| |||| ||| | | |||| || || ||| Sbjct 20621506 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 20621447 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || |||| | || || || |||| |||||| Sbjct 20621446 ATCCAGAAGGAGTCAACCTTACATCTTGTTTTACGCCTGCGTGGAGGC 20621399 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || ||| | || ||||| || || ||| | || || || | | Sbjct 20637634 ATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGT 20637575 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||||||||||||||| || ||||| || ||| Sbjct 20637574 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20637515 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||| || || || ||| |||| ||| | | |||| || || ||| Sbjct 20637514 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 20637455 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || |||| | || || || |||| |||||| Sbjct 20637454 ATCCAGAAGGAGTCAACCTTACATCTTGTTTTACGCCTGCGTGGAGGC 20637407 Score = 105 bits (116), Expect = 6e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || ||| | || ||||| || || ||| | || || || | | Sbjct 20621854 ATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGT 20621795 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||||||||||||||| || ||||| || ||| Sbjct 20621794 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20621735 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||| || || || ||| |||| ||| | | |||| || || ||| Sbjct 20621734 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 20621675 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || ||||| || || |||| Sbjct 20621674 ATCCAGAAAGAGTCGACTCTGCATCTTG 20621647 Score = 105 bits (116), Expect = 6e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || ||| | || ||||| || || ||| | || || || | | Sbjct 20637862 ATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGT 20637803 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||||||||||||||| || ||||| || ||| Sbjct 20637802 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20637743 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||| || || || ||| |||| ||| | | |||| || || ||| Sbjct 20637742 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 20637683 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || ||||| || || |||| Sbjct 20637682 ATCCAGAAAGAGTCGACTCTGCATCTTG 20637655 Score = 105 bits (116), Expect = 6e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || ||| | || ||||| || || ||| | || || || | | Sbjct 20638090 ATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGT 20638031 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||||||||||||||| || ||||| || ||| Sbjct 20638030 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20637971 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||| || || || ||| |||| ||| | | |||| || || ||| Sbjct 20637970 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 20637911 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || ||||| || || |||| Sbjct 20637910 ATCCAGAAAGAGTCGACTCTGCATCTTG 20637883 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || | || ||||| || || ||| | || || || | | Sbjct 20638318 ATGCAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGT 20638259 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||||||||||||||| || ||||| || ||| Sbjct 20638258 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20638199 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||| || || || ||| |||| ||| | | |||| || || ||| Sbjct 20638198 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 20638139 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || ||||| || || |||| Sbjct 20638138 ATCCAGAAAGAGTCGACTCTGCATCTTG 20638111 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || | || ||||| || || ||| | || || || | | Sbjct 20638546 ATGCAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGT 20638487 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||||||||||||||| || ||||| || ||| Sbjct 20638486 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20638427 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||| || || || ||| |||| ||| | | |||| || || ||| Sbjct 20638426 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 20638367 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || ||||| || || |||| Sbjct 20638366 ATCCAGAAAGAGTCGACTCTGCATCTTG 20638339 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || | || || || ||||| || | || || || | | Sbjct 20622082 ATGCAGATATTCGTAAAGACATTGACAGGGAAGACTATAACATTGGAGGTGGAGCCTAGT 20622023 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||||||||||||||| || ||||| || ||| Sbjct 20622022 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20621963 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||| || || || ||| |||| ||| | | |||| || || ||| Sbjct 20621962 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 20621903 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || ||||| || || |||| Sbjct 20621902 ATCCAGAAAGAGTCGACTCTGCATCTTG 20621875 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || | || || || ||||| || | || || || | | Sbjct 20638774 ATGCAGATATTCGTAAAGACATTGACAGGGAAGACTATAACATTGGAGGTGGAGCCTAGT 20638715 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||||||||||||||| || ||||| || ||| Sbjct 20638714 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20638655 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||| || || || ||| |||| ||| | | |||| || || ||| Sbjct 20638654 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 20638595 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || ||||| || || |||| Sbjct 20638594 ATCCAGAAAGAGTCGACTCTGCATCTTG 20638567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449892623007800