Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq789 116 3e-21 seq14 95.1 9e-15 >seq789 Length=29961 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| || || ||||| || || || || || || | || || || Sbjct 606 ACGAAGGACAAGATGGAGTGTTGATTCCTTCTGTATATTGTAGTCGGAAAGAGTTCGTCC 665 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||||||||||||| | || || | ||| || || || || || || ||||| Sbjct 666 ATCTTCCAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGGTCTGGTGGGATGCCTTCTTT 725 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | ||| || || | ||||| || |||| | | || ||||| |||||||| Sbjct 726 ATCTTGGATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGAGTTAT 785 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||| ||||| | || || || || |||||||| || Sbjct 786 AGTTTTTCCAGTAAGTGTCTTCACGAAAATCTGCATCTT 824 >seq14 Length=34464480 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| || || || ||||| || ||||| || || | | || || Sbjct 20621867 ACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCC 20621926 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || ||||| | ||||| | ||| || || || |||||||| ||||| Sbjct 20621927 ATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTT 20621986 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || ||| ||| | || | ||| ||| | | || || || | ||||| Sbjct 20621987 GTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAATGTTAT 20622046 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| || || || || || || || |||||||||||| Sbjct 20622047 AGTCTTCCCTGTCAATGTCTTTACGAATATCTGCATT 20622083 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| || || || ||||| || ||||| || || | | || || Sbjct 20638559 ACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCC 20638618 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || ||||| | ||||| | ||| || || || |||||||| ||||| Sbjct 20638619 ATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTT 20638678 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || ||| ||| | || | ||| ||| | | || || || | ||||| Sbjct 20638679 GTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAATGTTAT 20638738 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| || || || || || || || |||||||||||| Sbjct 20638739 AGTCTTCCCTGTCAATGTCTTTACGAATATCTGCATT 20638775 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| || || || ||||| || ||||| || || | | || || Sbjct 20621639 ACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCC 20621698 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || ||||| | ||||| | ||| || || || |||||||| ||||| Sbjct 20621699 ATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTT 20621758 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || ||| ||| | || | ||| ||| | | || || || | || || Sbjct 20621759 GTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGAT 20621818 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || ||||| || || || |||||||| |||||| Sbjct 20621819 CGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20621855 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| || || || ||||| || ||||| || || | | || || Sbjct 20637647 ACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCC 20637706 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || ||||| | ||||| | ||| || || || |||||||| ||||| Sbjct 20637707 ATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTT 20637766 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || ||| ||| | || | ||| ||| | | || || || | || || Sbjct 20637767 GTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGAT 20637826 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || ||||| || || || |||||||| |||||| Sbjct 20637827 CGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20637863 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| || || || ||||| || ||||| || || | | || || Sbjct 20637875 ACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCC 20637934 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || ||||| | ||||| | ||| || || || |||||||| ||||| Sbjct 20637935 ATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTT 20637994 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || ||| ||| | || | ||| ||| | | || || || | || || Sbjct 20637995 GTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGAT 20638054 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || ||||| || || || |||||||| |||||| Sbjct 20638055 CGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20638091 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| || || || ||||| || ||||| || || | | || || Sbjct 20638103 ACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCC 20638162 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || ||||| | ||||| | ||| || || || |||||||| ||||| Sbjct 20638163 ATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTT 20638222 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || ||| ||| | || | ||| ||| | | || || || | || || Sbjct 20638223 GTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGAT 20638282 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || ||||| || || || |||||||| |||||| Sbjct 20638283 CGTCTTACCAGTCAATGTCTTCACAAATATTTGCATT 20638319 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| || || || ||||| || ||||| || || | | || || Sbjct 20638331 ACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCC 20638390 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || ||||| | ||||| | ||| || || || |||||||| ||||| Sbjct 20638391 ATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTT 20638450 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || ||| ||| | || | ||| ||| | | || || || | || || Sbjct 20638451 GTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGAT 20638510 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || ||||| || || || |||||||| |||||| Sbjct 20638511 CGTCTTACCAGTCAATGTCTTCACAAATATTTGCATT 20638547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385215045049785