Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq42 105 9e-18 >seq42 Length=59508269 Score = 105 bits (116), Expect = 9e-18 Identities = 198/287 (69%), Gaps = 8/287 (3%) Strand=Plus/Plus Query 201876 GAAACAATGTATTGTGGTTTTACCGGAAGAAAAATTCAAAGTA-AAATTTTTATAGGCCC 201934 |||| |||||| ||| ||||| ||||||||| || || | ||||||| |||| || Sbjct 21233643 GAAATTATGTATAATGGATTTACTGGAAGAAAA-TTAAATTCACAAATTTTCTTAGGACC 21233701 Query 201935 AACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCGAGAAGT---CA 201991 ||| || ||||| ||| | |||||||||||| | |||||||| ||| || || | Sbjct 21233702 AACTTATTATCAACGTTTAAAACATATGGTTGATGATAAAATTCAT---AGTCGTTCACG 21233758 Query 201992 TGGTCAAGTAACAACATTACATCGTCAACCAAACTGTGGTCGGTCCCAAGGTGGTGGATT 202051 ||| | ||| || | | |||||||||| | ||||| | | |||||| | Sbjct 21233759 TGGACCTGTACAAATACTTAATCGTCAACCTATGGAAGGTCGTAGTCGTGATGGTGGTCT 21233818 Query 202052 AAGATTTGGAGAAATGGAAAAAGATTGTATTTTGGTTCATGGGGCCACACAATTTTTAAA 202111 | | ||||| ||||||||| |||||| | | |||||| || ||||||||||| Sbjct 21233819 ACGTTTTGGTGAAATGGAACGTGATTGTCAAATAGCTCATGGTGCAGCACAATTTTTACG 21233878 Query 202112 TGAAAGAATGTTTTTGTATTCAGATCCTTTTCAAATCGATGTGTGTA 202158 |||| | | ||||| | ||||| | ||| | ||||||||| Sbjct 21233879 TGAACGTTTATTTTTTGCTAGTGATCCATATCAGGTATATGTGTGTA 21233925 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/175 (73%), Gaps = 7/175 (4%) Strand=Plus/Plus Query 201147 GGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAATCAAGAAGATAGTGTT 201206 ||||||||||||||||| || |||||| || || || || |||||||||||| |||| Sbjct 21225850 GGTATTAATGCAATTGTTGCCATTGCAACATATACCGGTTATAATCAAGAAGATTCTGTT 21225909 Query 201207 ATTCTTAAT-AAAGCATCTATTGAAAGAGGTTTATTCGGTACCACAA-CTTATAATACTT 201264 ||| | ||| ||||| |||| || | ||||| || | | || || |||| ||||| Sbjct 21225910 ATTATCAATGAAAGC-GCTATACAACGTGGTTTCTTTCG-ATCAGAATTTTATCGTACTT 21225967 Query 201265 TTACAGCTGAAGAAACAAAAAATGGTATAG---TAGAGGAAAGGATTGATATACC 201316 || || | ||||||| | ||||||| | |||| ||| | |||| | ||| Sbjct 21225968 ATAAAGATCAAGAAACGCGACATGGTATGGATTTAGAAGAAGTGTTTGAAAAACC 21226022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655272750965000