Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 309 2e-78 seq42 87.8 1e-11 >seq1 Length=65476681 Score = 309 bits (342), Expect = 2e-78 Identities = 965/1477 (65%), Gaps = 28/1477 (2%) Strand=Plus/Minus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || ||| | |||| || || |||||||| || ||||| | |||||| || || ||||| Sbjct 47706009 TTGTCAACAGCAGATACGTTCAGAATACCGTTCGCATCTATATCAAACGTCACCTCAATC 47705950 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 ||||| || | ||||||||||||| ||| | | || | || || ||| Sbjct 47705949 TGAGGAGTACCACGAGGAGCAGGTGGGATACCTGATAGTTCGAACTTACCAAGCAGATTG 47705890 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 || || ||||| | | || || |||||||| | |||||| || ||| ||| || Sbjct 47705889 TTGTCCTTAGTCAGTGCACGCTCGCCCTCGAACACCTGGATAAGCACACCAGGTTGGTTG 47705830 Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 281656 || || || || || || | | | ||| |||||||| ||||| | | ||| Sbjct 47705829 TCCGAGTACGTCGTGAACGTTTGAGTCTGTTTCGTCGGAATTGTCGTGTTACGCTTAATC 47705770 Query 281657 ATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA-C 281715 | | ||||| | ||| ||||| ||||| | ||| | || || |||| || |||| | Sbjct 47705769 AAAGCCGTCATCACACCTCCAGCCGTTTCAAGACCCAATGATAGTGGAGCTACGTCAAGC 47705710 Query 281716 TAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAG 281774 | |||| | || | ||| || || | |||| ||||||||||| || | || Sbjct 47705709 AACAACAAG-TCCTGCACAGCCTCA-CACTTATCACCACTTAGAATAGCTGCCTGCACAG 47705652 Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834 | |||||||| || ||||||||||| ||||||| || || || | | ||| || |||| Sbjct 47705651 CTGCACCATAAGCCACAGCTTCATCCGGATTAATAGATTTGTTCAACTCTTTCCCGTTGA 47705592 Query 281835 AAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACA 281893 | || | ||| || | || | || ||||| ||||||| || || ||||| || || Sbjct 47705591 AGAAGTCTTGCAACAGCTTCTGC-ACTTTAGGGATACGAGTGGAACCACCAACCAACACT 47705533 Query 281894 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 281953 || || || | ||| || ||||||| || | ||| |||| | || |||||||| || Sbjct 47705532 ATGTCGTGAATCTGGGACTTATCCATCTTAGCATCTCGTAAAGCCTTCTCAACGGGATCC 47705473 Query 281954 AGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGA---GTG 282010 | | | | || | || | | | || || ||| || | ||| | ||| Sbjct 47705472 AACGTACCACGGAATAGATCGGCATTCAACTCCTCAAATCGTGCACGAGTGATCACCGTG 47705413 Query 282011 ACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAA 282070 | | ||||||| || || |||| || |||| || | | || || | ||| Sbjct 47705412 ---TAAAAATCAATACCATCACACAACGAGTCAATCTCCAGATTCGTCTGGGCACTCGAA 47705356 Query 282071 GATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT 282130 | || |||||| ||||||||||| |||||||| || | || || || ||| || Sbjct 47705355 CTCAATGTACGTTTCGCACGTTCACACGCTGTCCTCAGACGACGCAATGCAC--GCTTAT 47705298 Query 282131 TGATTCAAATCTGTTT--TATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGA- 282187 || | | ||| | ||| | ||||| ||| ||| |||| ||| | || | || | Sbjct 47705297 TGCTACGAATGTCTTTATTGTATTTCTTCTGGAACTCTTTCACAAAG--TGATCCACCAT 47705240 Query 282188 -CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 282246 ||||| |||||||||||||||||||| | |||| || | |||| | || | ||| Sbjct 47705239 GCGATTGTCAAAATCTTCACCTCCCAAGTGTGTATCACCAGCAGTAGACTTCACCTCGAA 47705180 Query 282247 AAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAAT 282306 | ||||| |||| | ||| | | |||||| || |||||||||| |||||| || Sbjct 47705179 TATACCATCCTCAATCGTCAAGATGGACACATCAAATGTACCACCACCCAAATCAAATAT 47705120 Query 282307 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 | ||||| || | || || || | |||||| |||| || ||||| || Sbjct 47705119 CAACACATTACGCTCACCACCAACCTTCTTGTCCAAACCATAGGCAATTGCCGCAGCTGT 47705060 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 || || ||||| |||||||| |||||||||||||| || ||||||||||| || || Sbjct 47705059 CGGCTCGTTAATGATTCTCAACACATTAAGACCAGCTATAGCACCTGCATCTTTCGTTGC 47705000 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA-CTTCTT 282485 ||| | ||| || || || || |||||||| || ||||| || || | | | || | Sbjct 47704999 TTGACGTTGACTGTCATTGAAGTAAGCAGGAACCGTTATAACAGCGTCACTCACCGTCCT 47704940 Query 282486 TTCCAATATAAGCGCTT---GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTT 282542 |||| |||| ||| || | ||||| || | || | |||||| ||||| | Sbjct 47704939 GCCCAA-ATAA---CTTTCAGCAACCTCCTTCATCTTCGTCAACACCATTGACGAAATCT 47704884 Query 282543 GTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTAC 282602 || | ||| | ||| ||| | ||| || || | | || || Sbjct 47704883 CCTCAGCGGAAAACATCTTTTTCTCACCCTTATACTCAACACAAATCTTCAGCTTCCCAC 47704824 Query 282603 CAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAA 282662 | || | | | || | |||||||||| |||||||| || || | | |||| | Sbjct 47704823 CGACTTGAGTCACCTCGAATGGCCAATGCTTCATATCACTCTGCACTGATGGATCATCGA 47704764 Query 282663 AATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTT 282722 | | ||| |||| || || |||||||| | ||||| ||||| || | || ||| Sbjct 47704763 ACCGACGACCGATTAGACGCTTCGCATCAAACACTGTATTTGTTGGGTTCATCGCCACTT 47704704 Query 282723 GATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAG 282782 | | || ||| |||| ||||| | | | || | ||||| || | ||||| || | Sbjct 47704703 GGTTCTTCGCTCCATCACCAATTAAACGCTCAGAGTCTGTGAACGCCACATAACTCGGTG 47704644 Query 282783 TTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTA 282842 | || | ||||| || ||||| ||||| || || |||||||||| || | ||||| | Sbjct 47704643 TCGTTCTGTTACCCTGGTCATTGGCAATTATCTCCACTTTACCATGCTGGAAAACACCAA 47704584 Query 282843 CACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 |||| | | ||||| || | ||| || ||||| || Sbjct 47704583 CACACGAATATGTTGTACCAAGATCGATTCCAATGGC 47704547 Score = 174 bits (192), Expect = 1e-37 Identities = 354/521 (68%), Gaps = 15/521 (3%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || ||||| ||||| || |||| |||||||||||||||||||||||||| | | | | Sbjct 49952746 TTCTTATCTAGACCGTAAGCAATTGCAGCAGCAGTTGGTTCATTAATAATCCGGAGTATA 49952687 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || | |||||||||| | || |||||||| || ||||| | |||| ||||||||||| Sbjct 49952686 TTCAAACCAGCAATTGTACCAGCATCTTTGGTTGCTTGGCGCTGTGCGTCGTTAAAATAA 49952627 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || |||||||||| ||| |||| || || | ||| |||| |||||| || | | Sbjct 49952626 GCTGGAACAGTAACAACTGCATGAGTAACCTTTTTGCCAAGATAAGCTTCAGCAAACTCT 49952567 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTT 282571 ||||| || | ||| | ||| | || || | || || | | | |||| ||| Sbjct 49952566 TTCATCTTCCCTAACACCATAGCAGAGATCTCCTCCGGGGCAAAAGTCTTGACTTC---- 49952511 Query 282572 TGAT-----ATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCC 282626 |||| ||| ||||| | ||| || || || ||||| ||| ||| || Sbjct 49952510 TGATCCAACGTGA-ACTTCGACATACGGCTTGTTCTTTTTATTAACAACGGAAAAAGGGA 49952452 Query 282627 AATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 282686 ||| | || || || ||| || |||| || | ||| ||||| | || || Sbjct 49952451 AATGAGTTATGTCATTCTGTACAGTTGATTCATCGAACTTTCTTCCAATAAGTCTCTTGA 49952392 Query 282687 CATCAAAAATAGTATTGGTTGGATTAACTG-CAGCTTGATATTTGGCTGCATCTCCAATC 282745 | || |||| || || ||||| || |||| || | ||| || |||||||||||| Sbjct 49952391 CGTCGAAAACTGTGTTTTCCGGATTCGATGTCAGC-TGGTTTTTAGCAGCATCTCCAATC 49952333 Query 282746 AGATGTT---CTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCA 282802 || | | || | || |||| |||||||| ||||| | | ||||| |||||| Sbjct 49952332 AGTCGCTCGCCTTCCGGAGTGAATGCCACATATGAGGGAGTAATCCTGTTACCCTGATCA 49952273 Query 282803 TTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTAC 282843 |||||||||||||||||| || ||| ||||||| || Sbjct 49952272 TTCGCAATAATTTCAACTCGGCCTCCTTGAAATACACCAAC 49952232 Score = 111 bits (122), Expect = 1e-18 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 86114 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 86173 ||| |||||| |||| || || ||||||||||||||||| || || | || |||| Sbjct 49952739 CTAGACCGTAAGCAATTGCAGCAGCAGTTGGTTCATTAATAATCCGGAGTATATTCAAAC 49952680 Query 86174 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 86233 | |||||| || ||| ||| |||||||| | ||||||||| |||||||| ||||| | Sbjct 49952679 CAGCAATTGTACCAGCATCTTTGGTTGCTTGGCGCTGTGCGTCGTTAAAATAAGCTGGAA 49952620 Query 86234 CAGTAATAACTGCTTTATTAA 86254 |||||| |||||| | | ||| Sbjct 49952619 CAGTAACAACTGCATGAGTAA 49952599 Score = 93.3 bits (102), Expect = 3e-13 Identities = 189/281 (67%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 ||||| ||||||||||||||||| || | ||||| || | |||| | || | ||| Sbjct 51115312 CGATTGTCAAAATCTTCACCTCCAAAGTGCGTATTACCAGCAGTAGACTTCACCTCGAAT 51115253 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | ||||| |||| | | | || |||||| || |||||||||| ||||| || Sbjct 51115252 ACACCATCCTCAATCATCTAGATAGACACATCAAATGTACCACCACCCAAGTCAAATATC 51115193 Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 | ||||| ||| | || || || | |||||| |||| || | | || Sbjct 51115192 AACACATTACGTTCACCACCAACTTTCTTGTCCAAACCATAGGCAATTGCCTAAACTGTC 51115133 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || || ||||| |||||||| |||||||||||| | | |||||||||| || ||| Sbjct 51115132 GGCTCGTTAATGATTCTCAACACATTAAGACCAACTACAGCACCTGCATCTTGCGTTGCT 51115073 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAAC 282468 | | ||| || | || || |||||||| | ||||| Sbjct 51115072 TCACGTTGACTGTCACTGAAGTAAGCAGGAACTGCTATAAC 51115032 Score = 87.8 bits (96), Expect = 1e-11 Identities = 188/281 (67%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 ||||| ||||||||||||||||| || | ||||| | | |||| | || | ||| Sbjct 51125252 CGATTGTCAAAATCTTCACCTCCAAAGTGCGTATTACGAGCAGTAGACTTCACCTCGAAT 51125311 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | ||||| |||| | | | || |||||| || |||||||||| ||||| || Sbjct 51125312 ACACCATCCTCAATCATCTAGATAGACACATCAAATGTACCACCACCCAAGTCAAATATC 51125371 Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 | ||||| ||| | || || || | |||||| |||| || | | || Sbjct 51125372 AACACATTACGTTCACCACCAACTTTCTTGTCCAAACCATAGGCAATTGCCTAAACTGTC 51125431 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || || ||||| |||||||| |||||||||||| | | |||||||||| || ||| Sbjct 51125432 GGCTCGTTAATGATTCTCAACACATTAAGACCAACTACAGCACCTGCATCTTGCGTTGCT 51125491 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAAC 282468 | | ||| || | || || |||||||| | ||||| Sbjct 51125492 TCACGTTGACTGTCACTGAAGTAAGCAGGAACTGCTATAAC 51125532 >seq42 Length=59508269 Score = 87.8 bits (96), Expect = 1e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 435118 GGTCTTGGACCTTTTGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAAT 435177 |||||| ||| | |||||| || ||||| | ||| |||||||||||| | | | || Sbjct 34651611 GGTCTTTCACCATCTGAATTCTTTTTCCATGCTATGAGTGGTCGTGAAGGGTTGACTGAT 34651670 Query 435178 ACAGCTATTAAAACTGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAG 435228 || ||| | |||||||| ||||| |||||||| ||| ||| ||| |||||| Sbjct 34651671 ACTGCTGTAAAAACTGCAGATACAGGTTATATGCAACGAAGACTAGTCAAG 34651721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740586950240010