Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq14 181 2e-40 seq1 179 7e-40 seq789 147 4e-30 >seq14 Length=34464480 Score = 181 bits (200), Expect = 2e-40 Identities = 172/220 (78%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | |||||||| || |||||||| || || || ||||| ||| | | || Sbjct 20621867 ACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCC 20621926 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || || ||||| ||||| | | |||||| || ||||| || ||||| || Sbjct 20621927 ATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTT 20621986 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||| ||||| ||||| ||||| |||||| |||| || || ||||| ||||| Sbjct 20621987 GTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAATGTTAT 20622046 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 ||||| |||||||| |||||||| |||||||||||| || Sbjct 20622047 AGTCTTCCCTGTCAATGTCTTTACGAATATCTGCATTCTT 20622086 Score = 181 bits (200), Expect = 2e-40 Identities = 172/220 (78%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | |||||||| || |||||||| || || || ||||| ||| | | || Sbjct 20638559 ACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCC 20638618 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || || ||||| ||||| | | |||||| || ||||| || ||||| || Sbjct 20638619 ATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTT 20638678 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||| ||||| ||||| ||||| |||||| |||| || || ||||| ||||| Sbjct 20638679 GTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAATGTTAT 20638738 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 ||||| |||||||| |||||||| |||||||||||| || Sbjct 20638739 AGTCTTCCCTGTCAATGTCTTTACGAATATCTGCATTCTT 20638778 Score = 176 bits (194), Expect = 9e-39 Identities = 169/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | |||||||| || |||||||| || || || ||||| ||| | | || Sbjct 20621639 ACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCC 20621698 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || || ||||| ||||| | | |||||| || ||||| || ||||| || Sbjct 20621699 ATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTT 20621758 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||| ||||| ||||| ||||| |||||| |||| || || ||||| || || Sbjct 20621759 GTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGAT 20621818 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||| || ||||||||||| |||||||| |||||| Sbjct 20621819 CGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20621855 Score = 176 bits (194), Expect = 9e-39 Identities = 169/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | |||||||| || |||||||| || || || ||||| ||| | | || Sbjct 20637647 ACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCC 20637706 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || || ||||| ||||| | | |||||| || ||||| || ||||| || Sbjct 20637707 ATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTT 20637766 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||| ||||| ||||| ||||| |||||| |||| || || ||||| || || Sbjct 20637767 GTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGAT 20637826 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||| || ||||||||||| |||||||| |||||| Sbjct 20637827 CGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20637863 Score = 176 bits (194), Expect = 9e-39 Identities = 169/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | |||||||| || |||||||| || || || ||||| ||| | | || Sbjct 20637875 ACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCC 20637934 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || || ||||| ||||| | | |||||| || ||||| || ||||| || Sbjct 20637935 ATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTT 20637994 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||| ||||| ||||| ||||| |||||| |||| || || ||||| || || Sbjct 20637995 GTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGAT 20638054 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||| || ||||||||||| |||||||| |||||| Sbjct 20638055 CGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20638091 Score = 159 bits (176), Expect = 7e-34 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635 |||| | ||||| | || || | ||| | || | || || || ||||| || || | Sbjct 20621392 ATCATATGCCTCCACGCAGGCGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGT 20621451 Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695 | ||||| ||| | | || ||||| | || || ||||| ||||| | | |||||| | Sbjct 20621452 AGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGT 20621511 Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755 | ||||| || ||||| || ||||| ||||| ||||| ||||| ||||| |||||| ||| Sbjct 20621512 CAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAG 20621571 Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || || ||||| || |||||||| || ||||||||||| |||||||| |||||| Sbjct 20621572 GCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20621627 Score = 159 bits (176), Expect = 7e-34 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635 |||| | ||||| | || || | ||| | || | || || || ||||| || || | Sbjct 20637400 ATCATATGCCTCCACGCAGGCGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGT 20637459 Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695 | ||||| ||| | | || ||||| | || || ||||| ||||| | | |||||| | Sbjct 20637460 AGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGT 20637519 Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755 | ||||| || ||||| || ||||| ||||| ||||| ||||| ||||| |||||| ||| Sbjct 20637520 CAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAG 20637579 Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || || ||||| || |||||||| || ||||||||||| |||||||| |||||| Sbjct 20637580 GCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20637635 >seq1 Length=65476681 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || ||||| ||||| || |||||||| ||||| ||||||| Sbjct 54270786 TACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAG 54270727 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| |||||||| || || ||||||||||| || | ||||||||| || | Sbjct 54270726 ACAATGTGCGACCATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTG 54270667 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| |||||||| ||||| || || ||||| ||||| || ||| | || || | Sbjct 54270666 GAATCCCTTCTTTATCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTCGGCTCAA 54270607 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| ||||| || || || || || || || ||||| ||||| Sbjct 54270606 CTTCCAAAGTGATCGTTTTACCAGTTAATGTTTTCACGAATATTTGCAT 54270558 Score = 178 bits (196), Expect = 3e-39 Identities = 178/230 (77%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCT-GTATATTATAATCA 82640 |||| || | | ||||| || ||||| ||||| || ||||||| | |||| ||||| Sbjct 54271015 TACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTTGGATATGTAAATCA 54270956 Query 82641 GATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGA 82700 || | | | ||| |||||||| || || ||||||||||| || | ||||||||| || Sbjct 54270955 GACAATGTGCGACCATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGT 54270896 Query 82701 GGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 || || ||||| |||||||| ||||| || || ||||| ||||| || ||| | || || Sbjct 54270895 GGAATCCCTTCTTTATCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTCGGCTCA 54270836 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| ||||| || || ||||| ||||| ||||| |||||||| Sbjct 54270835 ACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 54270786 >seq789 Length=29961 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | || || || ||||| ||||||||||| || || | Sbjct 593 TACCACCACGAAGACGAAGGACAAGATGGAGTGTTGATTCCTTCTGTATATTGTAGTCGG 652 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| ||| || ||||| |||||||| |||||||| |||| | |||||| ||||| | Sbjct 653 AAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGGTCTGGTG 712 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| |||||||| || || || || || ||| || |||||| ||| || | Sbjct 713 GGATGCCTTCTTTATCTTGGATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAA 772 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | |||||| || || || || | ||||| || || |||||||| Sbjct 773 CTTCTAGAGTTATAGTTTTTCCAGTAAGTGTCTTCACGAAAATCTGCAT 821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981816067000015