Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq34 100 7e-16 seq1 87.8 4e-12 >seq34 Length=32115376 Score = 100 bits (110), Expect = 7e-16 Identities = 337/516 (65%), Gaps = 23/516 (4%) Strand=Plus/Minus Query 304979 CAACGCATTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGAT 305038 ||||| | |||||||||| || ||||||||||||||||| ||||||||||||||||| Sbjct 10002470 CAACGACTCAAAGGTAAAGCTGGCCGTATTCGAGGTAATCTTATGGGAAAACGTGTTGAC 10002411 Query 305039 TTTAGTGCAAGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTT 305098 || || | | ||| |||||| | ||| | | ||| | | || || | || || Sbjct 10002410 TTCTCAGCTCGTACTGTTATCACAGCCGATCCCAACCTTAATTTAGATCAAGTGGGCGTC 10002351 Query 305099 CCAATTGAAATTGCTTTAAAACTAACATTTCCAGAGAAAGTTAACGAGAAAAATATTAAA 305158 ||| ||| ||| ||| ||||| | ||| |||| ||||| | || || | Sbjct 10002350 CCACGAACAATAGCTCAAAATCTAACTTATCCTGAGATAGTTACTCAATTTAACATAGAT 10002291 Query 305159 CATTTG-AGACGTTGTGTTCTTAATGGAAATAGCAAGTATCCAGGTGCTCGTGCTGTTAT 305217 |||||| | | | | || | ||||||| | ||||| |||||| ||| | Sbjct 10002290 CATTTGCAAAAGCTA-GTACAGAATGGAACCCTC---TATCCTGGTGCTAA----GTT-T 10002240 Query 305218 AAAACACAAGCAAAAGAAGACAATATCTTTGAACCATATCGATTTAAAACAATTCAG--- 305274 | | | ||| | ||| ||| | || |||| |||| ||||| Sbjct 10002239 ATCGTGCGTGAAAACGGAGATCGTATAGATTTACGGTATCATCCTAAAGT--TTCAGACC 10002182 Query 305275 TAAAATGCTTGAAATTAATGATATTGTTATCAGACATTTG---AATGACAATGATTGGGT 305331 | | | ||| | || | |||||||| ||||| || ||||| ||| | || Sbjct 10002181 TCACA--CTTCAGGTTGGTTATATTGTTGAGCGACATATGTTAAATGA---TGACTTTGT 10002127 Query 305332 TCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGT 305391 | |||||| | |||||| | ||||||||||||||||||||| |||| || ||||| Sbjct 10002126 GATATTCAATCGTCAACCAACGCTGCATAAAATGTCTATGATGTGTCATCGTGTTAAAGT 10002067 Query 305392 ATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTT 305451 || || | | || ||||| ||||| | || | | | || |||||||| ||||| Sbjct 10002066 CTTGCCTTGGTCTACGTTTCGTCTAAATCTGTCTGTTACTTCACCGTATAATGCTGATTT 10002007 Query 305452 TGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 || || ||||||||||| | ||| | || ||||| Sbjct 10002006 CGACGGCGATGAAATGAACTTACATCTCCCACAATC 10001971 >seq1 Length=65476681 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/105 (80%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 167240 CATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAA 167298 ||| | |||||| |||||||| |||||| |||| |||||||| || ||||||| ||| | Sbjct 13164154 CATCATACCACCGGCATTATCAAATTCAC-CGCAATAATTTGGAGCAGAAAATAAAGTTA 13164096 Query 167299 CTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTT 167343 |||||| |||| | || ||||| ||||||||||||| |||| Sbjct 13164095 CTAATTGACGACGACAGAAAAATTCGAAACCATCTTCAACTACTT 13164051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186799342655485