Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 114 8e-21 seq14 111 1e-19 >seq1 Length=65476681 Score = 114 bits (126), Expect = 8e-21 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| |||||||| || |||||| |||||| || || |||||||| || Sbjct 54270785 ACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGA 54270726 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| | || || | || || || ||||| |||| ||| || ||||| | || Sbjct 54270725 CAATGTGCGACCATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGG 54270666 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | |||||||| || || || |||| ||| ||| |||||| || | || | Sbjct 54270665 AATCCCTTCTTTATCTTGGATCTTGGCCTTCA-CATTCTCAATGGTGTCACTCGGCTCAA 54270607 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | || | |||||||||||||| ||||| ||||| || || || ||||| || Sbjct 54270606 CTTCCAAAGTGATCGTTTTACCAGTTAATGTTTTCACGAATATTTGCATCGT 54270555 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTT-TTGTATGTTGTAATCGG 33580 |||||| | | ||| |||||||| || |||||| |||||| ||| || | |||| | Sbjct 54271014 ACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTTGGATATGTAAATCAG 54270955 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | | |||||| | || || | || || || ||||| |||| ||| || ||||| | | Sbjct 54270954 ACAATGTGCGACCATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTG 54270895 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCC 33699 | | |||||||| || || || |||| ||| ||| |||||| || | || Sbjct 54270894 GAATCCCTTCTTTATCTTGGATCTTGGCCTTCA-CATTCTCAATGGTGTCACTCGGCTCA 54270836 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | |||||||||||||| || || || || ||||| ||||||||| Sbjct 54270835 ACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCATA 54270785 >seq14 Length=34464480 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| ||||| |||||| || |||||||| || || Sbjct 20621628 CCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGAC 20621687 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || ||||| || || || || || |||||||| || || || | || Sbjct 20621688 AGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGA 20621747 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| || ||| |||| |||| || | || || || | ||||| Sbjct 20621748 ATACCTTCTTTGTCTTGGATCTTCGCTTTC-ACATTCTCAATAGTATCACTAGGCTCCAC 20621806 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||||||| ||||| || ||||| || ||||| || ||||| Sbjct 20621807 CTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20621854 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| ||||| |||||| || |||||||| || || Sbjct 20637636 CCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGAC 20637695 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || ||||| || || || || || |||||||| || || || | || Sbjct 20637696 AGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGA 20637755 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| || ||| |||| |||| || | || || || | ||||| Sbjct 20637756 ATACCTTCTTTGTCTTGGATCTTCGCTTTC-ACATTCTCAATAGTATCACTAGGCTCCAC 20637814 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||||||| ||||| || ||||| || ||||| || ||||| Sbjct 20637815 CTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20637862 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| ||||| |||||| || |||||||| || || Sbjct 20637864 CCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGAC 20637923 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || ||||| || || || || || |||||||| || || || | || Sbjct 20637924 AGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGA 20637983 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| || ||| |||| |||| || | || || || | ||||| Sbjct 20637984 ATACCTTCTTTGTCTTGGATCTTCGCTTTC-ACATTCTCAATAGTATCACTAGGCTCCAC 20638042 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||||||| ||||| || ||||| || ||||| || ||||| Sbjct 20638043 CTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20638090 Score = 107 bits (118), Expect = 1e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 ||||| || | ||||| || ||| || || |||||||| || || || || ||| | Sbjct 20621412 CGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA 20621471 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || ||||| || || || || || |||||||| || || || | || | |||||||||| Sbjct 20621472 TCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTG 20621531 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || || ||| |||| |||| || | || || || | ||||| || | |||||| Sbjct 20621532 TCTTGGATCTTCGCTTTC-ACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGAT 20621590 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| ||||| || ||||| || ||||| || ||||| Sbjct 20621591 CGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20621626 Score = 107 bits (118), Expect = 1e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 ||||| || | ||||| || ||| || || |||||||| || || || || ||| | Sbjct 20637420 CGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA 20637479 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || ||||| || || || || || |||||||| || || || | || | |||||||||| Sbjct 20637480 TCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTG 20637539 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || || ||| |||| |||| || | || || || | ||||| || | |||||| Sbjct 20637540 TCTTGGATCTTCGCTTTC-ACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGAT 20637598 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| ||||| || ||||| || ||||| || ||||| Sbjct 20637599 CGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20637634 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| ||||| |||||| || |||||||| || || Sbjct 20638092 CCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGAC 20638151 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || ||||| || || || || || |||||||| || || || | || Sbjct 20638152 AGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGA 20638211 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| || ||| |||| |||| || | || || || | ||||| Sbjct 20638212 ATACCTTCTTTGTCTTGGATCTTCGCTTTC-ACATTCTCAATAGTATCACTAGGCTCCAC 20638270 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||||||| ||||| || || || || ||||| || ||||| Sbjct 20638271 CTCCAACGTGATCGTCTTACCAGTCAATGTCTTCACAAATATTTGCAT 20638318 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| ||||| |||||| || |||||||| || || Sbjct 20638320 CCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGAC 20638379 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || ||||| || || || || || |||||||| || || || | || Sbjct 20638380 AGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGA 20638439 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| || ||| |||| |||| || | || || || | ||||| Sbjct 20638440 ATACCTTCTTTGTCTTGGATCTTCGCTTTC-ACATTCTCAATAGTATCACTAGGCTCCAC 20638498 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||||||| ||||| || || || || ||||| || ||||| Sbjct 20638499 CTCCAACGTGATCGTCTTACCAGTCAATGTCTTCACAAATATTTGCAT 20638546 Score = 100 bits (110), Expect = 2e-16 Identities = 174/249 (70%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| ||||| |||||| || |||||||| || || Sbjct 20621856 CCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGAC 20621915 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || ||||| || || || || || |||||||| || || || | || Sbjct 20621916 AGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGA 20621975 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| || ||| |||| |||| || | || || || | ||||| Sbjct 20621976 ATACCTTCTTTGTCTTGGATCTTCGCTTTC-ACATTCTCAATAGTATCACTAGGCTCCAC 20622034 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTGTT 33761 || | || || || || ||||| || || ||||| || |||||||| || | || || Sbjct 20622035 CTCCAATGTTATAGTCTTCCCTGTCAATGTCTTTACGAATATCTGCATTCTTCGAGTATT 20622094 Query 33762 TATCGCGCA 33770 | ||| ||| Sbjct 20622095 T-TCGTGCA 20622102 Score = 100 bits (110), Expect = 2e-16 Identities = 174/249 (70%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| ||||| |||||| || |||||||| || || Sbjct 20638548 CCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGAC 20638607 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || ||||| || || || || || |||||||| || || || | || Sbjct 20638608 AGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGA 20638667 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| || ||| |||| |||| || | || || || | ||||| Sbjct 20638668 ATACCTTCTTTGTCTTGGATCTTCGCTTTC-ACATTCTCAATAGTATCACTAGGCTCCAC 20638726 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTGTT 33761 || | || || || || ||||| || || ||||| || |||||||| || | || || Sbjct 20638727 CTCCAATGTTATAGTCTTCCCTGTCAATGTCTTTACGAATATCTGCATTCTTCGAGTATT 20638786 Query 33762 TATCGCGCA 33770 | ||| ||| Sbjct 20638787 T-TCGTGCA 20638794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328700454619200