Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq14 116 4e-21 seq1 104 2e-17 seq789 100 3e-16 >seq14 Length=34464480 Score = 116 bits (128), Expect = 4e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| ||||| | ||||| | ||||||| || || ||||||||||| || || Sbjct 20621405 ACGCAGGCGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGAGT 20621464 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| | ||| ||||| | |||| | ||| ||||| || ||||| || || Sbjct 20621465 ACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACC 20621524 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || || || ||||| | || | |||||| | |||||||| || | Sbjct 20621525 TTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAA 20621584 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | ||| |||||||||| || || | || || ||||| Sbjct 20621585 CGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20621626 Score = 116 bits (128), Expect = 4e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| ||||| | ||||| | ||||||| || || ||||||||||| || || Sbjct 20637413 ACGCAGGCGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGAGT 20637472 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| | ||| ||||| | |||| | ||| ||||| || ||||| || || Sbjct 20637473 ACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACC 20637532 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || || || ||||| | || | |||||| | |||||||| || | Sbjct 20637533 TTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAA 20637592 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | ||| |||||||||| || || | || || ||||| Sbjct 20637593 CGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20637634 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||||| |||||| | ||| ||||| | Sbjct 20621661 GACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCG 20621720 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||| ||||| || ||||| || |||||||| || || || ||||| Sbjct 20621721 AAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACA 20621780 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| | |||||||| || | ||| | ||| |||||||||| || || Sbjct 20621781 TTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTC 20621840 Query 132110 ATGAAAATCTGCAT 132123 | || || ||||| Sbjct 20621841 ACAAATATTTGCAT 20621854 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||||| |||||| | ||| ||||| | Sbjct 20637669 GACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCG 20637728 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||| ||||| || ||||| || |||||||| || || || ||||| Sbjct 20637729 AAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACA 20637788 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| | |||||||| || | ||| | ||| |||||||||| || || Sbjct 20637789 TTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTC 20637848 Query 132110 ATGAAAATCTGCAT 132123 | || || ||||| Sbjct 20637849 ACAAATATTTGCAT 20637862 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||||| |||||| | ||| ||||| | Sbjct 20637897 GACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCG 20637956 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||| ||||| || ||||| || |||||||| || || || ||||| Sbjct 20637957 AAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACA 20638016 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| | |||||||| || | ||| | ||| |||||||||| || || Sbjct 20638017 TTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTC 20638076 Query 132110 ATGAAAATCTGCAT 132123 | || || ||||| Sbjct 20638077 ACAAATATTTGCAT 20638090 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||||| |||||| | ||| ||||| | Sbjct 20638125 GACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCG 20638184 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||| ||||| || ||||| || |||||||| || || || ||||| Sbjct 20638185 AAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACA 20638244 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| | |||||||| || | ||| | ||| |||||||||| || || Sbjct 20638245 TTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAATGTCTTC 20638304 Query 132110 ATGAAAATCTGCAT 132123 | || || ||||| Sbjct 20638305 ACAAATATTTGCAT 20638318 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||||| |||||| | ||| ||||| | Sbjct 20638353 GACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCG 20638412 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||| ||||| || ||||| || |||||||| || || || ||||| Sbjct 20638413 AAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACA 20638472 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| | |||||||| || | ||| | ||| |||||||||| || || Sbjct 20638473 TTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAATGTCTTC 20638532 Query 132110 ATGAAAATCTGCAT 132123 | || || ||||| Sbjct 20638533 ACAAATATTTGCAT 20638546 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||||| |||||| | ||| ||||| | Sbjct 20621889 GACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCG 20621948 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||| ||||| || ||||| || |||||||| || || || ||||| Sbjct 20621949 AAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACA 20622008 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| | |||||||| || | || | || || || |||| || ||| Sbjct 20622009 TTCTCAATAGTATCACTAGGCTCCACCTCCAATGTTATAGTCTTCCCTGTCAATGTCTTT 20622068 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 20622069 ACGAATATCTGCAT 20622082 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||||| |||||| | ||| ||||| | Sbjct 20638581 GACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCG 20638640 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||| ||||| || ||||| || |||||||| || || || ||||| Sbjct 20638641 AAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACA 20638700 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| | |||||||| || | || | || || || |||| || ||| Sbjct 20638701 TTCTCAATAGTATCACTAGGCTCCACCTCCAATGTTATAGTCTTCCCTGTCAATGTCTTT 20638760 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 20638761 ACGAATATCTGCAT 20638774 >seq1 Length=65476681 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | |||||||| || || ||||| || || || || | Sbjct 54270772 CGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTGCGACCA 54270713 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| ||||| | | |||| ||||| |||||||| || || || ||||||||| Sbjct 54270712 TCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGGAATCCCTTCTTTA 54270653 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || || ||||||| ||||| | || | | Sbjct 54270652 TCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTCGGCTCAACTTCCAAAGTGATC 54270593 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| | ||||| | ||| || ||||| Sbjct 54270592 GTTTTACCAGTTAATGTTTTCACGAATATTTGCAT 54270558 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTT-TTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| ||||| || | | |||||||| ||| || | | || || || || Sbjct 54271001 CGCAACACCAAGTGAAGAGTGGACTCTTTCTTGGATATGTAAATCAGACAATGTGCGACC 54270942 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| ||||| ||||| | | |||| ||||| |||||||| || || || |||||||| Sbjct 54270941 ATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGGAATCCCTTCTTT 54270882 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 ||| || || |||| | || | || || ||||||| ||||| | || | Sbjct 54270881 ATCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTCGGCTCAACTTCCAAAGTGAT 54270822 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||||||||| || || | ||||||||||| Sbjct 54270821 CGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 54270786 >seq789 Length=29961 Score = 100 bits (110), Expect = 3e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| || || || || ||||||||| | || || |||||| || ||||| || | Sbjct 626 TTGATTCCTTCTGTATATTGTAGTCGGAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAG 685 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | | |||| ||| ||||| ||||| || |||||||||||||| | |||| | | | Sbjct 686 CAAAAATTAAACGTTGTTGGTCTGGTGGGATGCCTTCTTTATC-TTGGATTTTCGCCTTA 744 Query 132048 ACTG-TTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTT 132106 |||| ||| | ||||| | ||||| ||||| | || | ||||| ||||| || || Sbjct 745 ACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGAGTTATAGTTTTTCCAGTAAGTGTC 804 Query 132107 TTTATGAAAATCTGCAT 132123 || | |||||||||||| Sbjct 805 TTCACGAAAATCTGCAT 821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476605927488600