Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq693 91.5 5e-15 seq1 87.8 6e-14 seq660 86.0 2e-13 seq255 86.0 2e-13 seq42 82.4 2e-12 >seq693 Length=3605463 Score = 91.5 bits (100), Expect = 5e-15 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |||||| Sbjct 2722212 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 2722153 Score = 86.0 bits (94), Expect = 2e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 2677606 AGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 2677547 Score = 86.0 bits (94), Expect = 2e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 2679742 AGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 2679683 Score = 86.0 bits (94), Expect = 2e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 2681893 AGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 2681834 Score = 86.0 bits (94), Expect = 2e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 2684044 AGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 2683985 Score = 86.0 bits (94), Expect = 2e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 2686186 AGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 2686127 Score = 86.0 bits (94), Expect = 2e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 2688325 AGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 2688266 Score = 86.0 bits (94), Expect = 2e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 2689964 AGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 2689905 Score = 86.0 bits (94), Expect = 2e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 2692104 AGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 2692045 Score = 86.0 bits (94), Expect = 2e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 2694263 AGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 2694204 Score = 86.0 bits (94), Expect = 2e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 2696410 AGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 2696351 >seq1 Length=65476681 Score = 87.8 bits (96), Expect = 6e-14 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || || | |||||||||||||||||||| |||||||||||||||||| ||||| ||||| Sbjct 6643915 ATCGCCGGAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCG 6643856 Query 2826 ACCCCGGG 2833 | |||||| Sbjct 6643855 ATCCCGGG 6643848 >seq660 Length=556124 Score = 86.0 bits (94), Expect = 2e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 1642 AGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 1701 Score = 86.0 bits (94), Expect = 2e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 3785 AGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 3844 Score = 86.0 bits (94), Expect = 2e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 5928 AGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 5987 Score = 86.0 bits (94), Expect = 2e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 8079 AGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCCATCCCGGG 8138 Score = 86.0 bits (94), Expect = 2e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 10235 AGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 10294 >seq255 Length=4519 Score = 86.0 bits (94), Expect = 2e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 463 AGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 404 >seq42 Length=59508269 Score = 82.4 bits (90), Expect = 2e-12 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||||| |||||||||||||||||| ||||| ||||| | ||||| Sbjct 8722861 AGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATTCCGGG 8722802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849446580825